View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_high_24 (Length: 234)
Name: NF16218_high_24
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 40551942 - 40551743
Alignment:
| Q |
19 |
agttcagtggtattattgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttat |
118 |
Q |
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| T |
40551942 |
agttctgtggtattattgttttcagttgtttagatcactctaacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttat |
40551843 |
T |
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| Q |
119 |
ttcgcattcatgtctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtagcactgagttttctatttcgagtatt |
218 |
Q |
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| T |
40551842 |
ttcgcattcatatctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtagcaccgagttttctatttcgagtatt |
40551743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 40569059 - 40568971
Alignment:
| Q |
122 |
gcattcatgtctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtagcactgagttttctatttc |
211 |
Q |
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| T |
40569059 |
gcattcatgtctt-gtttactaattctattcagcagcaggcatacatatcactaattgtggatgacttgcagcactgagttttctgtttc |
40568971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 15110508 - 15110325
Alignment:
| Q |
25 |
gtggtattattgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgca |
124 |
Q |
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| T |
15110508 |
gtggtattattgtttttggttgttcggattactctaaaattgggatagggtgacaaatttacgtacttacatttgtactcttatgcgtgaatatttcata |
15110409 |
T |
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| Q |
125 |
ttcatgtctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtagcactgagttttctat |
208 |
Q |
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| T |
15110408 |
ttcatctcgtcgtttatgtattctattcaatagcagccatacaaatcactaaatatggatggcttgtagcaccgagttgtctat |
15110325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 15109895 - 15110018
Alignment:
| Q |
28 |
gtattattgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattc |
127 |
Q |
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| T |
15109895 |
gtattcttgtttttggttgtttggattactctaacattgggatagggtgacaaatttacgtacttaaatttgtactctaacgagtggatatttcacattc |
15109994 |
T |
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| Q |
128 |
atgtctttgtttatgtattctatt |
151 |
Q |
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| T |
15109995 |
atctcttcgtttatgtattctatt |
15110018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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