View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_high_27 (Length: 215)
Name: NF16218_high_27
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 32475860 - 32476040
Alignment:
| Q |
18 |
gaacatagaaaaaatcatgaactgaatagtttcaaattatataatttgagccctccctcaccatataaagtaagaattttaacag---tcttgaaccagt |
114 |
Q |
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| T |
32475860 |
gaacatagaaaaaatcatgaactgaatagtttcaaattatataatttgagccctccctcaccatataaagtaagaattttaacagtactcttgaaccagt |
32475959 |
T |
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| Q |
115 |
tcagattatataatccaaacatttcttggtcatgttcggataatatcattcgaaatagttcagagtttcgatggttacttg |
195 |
Q |
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| T |
32475960 |
tcatattatataatccaaacatttcttggtcgtgttcggataatatcattcgaaatagttcaaagtttcgatggttacttg |
32476040 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 9075166 - 9075225
Alignment:
| Q |
81 |
tataaagtaagaattttaaca--gtcttgaaccagttcagattatataatccaaacattt |
138 |
Q |
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| T |
9075166 |
tataaagtatgaattttaacacagtcttgaacgagttcagattatataatccaaacattt |
9075225 |
T |
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