View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_high_4 (Length: 507)
Name: NF16218_high_4
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 37582354 - 37582006
Alignment:
| Q |
1 |
atagagtccaaatctatgtattatca---aagtgaaaggagacagcaacgtcaaagtgcctggcaaattgcacaccacagagcgcacagctgcagaattt |
97 |
Q |
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| T |
37582354 |
atagagtccaaatctatgtagtatcagtaaagtgaaaggagacagcaacgtcaaagtgcctggcaaattgcacaccacagagcgcacagctgcagaattt |
37582255 |
T |
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| Q |
98 |
ggtgcaacaaaaataggtagatgggtaggcaaagcagcagatctaattcactttcctcgggtgggcagaaaaaagatatcacggatcggcagaatatgaa |
197 |
Q |
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| T |
37582254 |
ggtgcaacaaaaataggtagatgggtaggcaaagcagcagatctaattcactttcctcgggtgggcagaaaaaagatatcacggatcggcagaatatgaa |
37582155 |
T |
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| Q |
198 |
tctgtagaataaacaatgcaatacaacaagtccagtcagtaacttcaattttagtagtgcccaaagaagtctaggtggcaatcaacccaccgcaatacca |
297 |
Q |
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| T |
37582154 |
tctgtagaataaacaatgcaatacaacaagtccagtcagtaacttcaattttagtagtgcccaaagaagtctaggtggcaatcaacccaccgcaatacca |
37582055 |
T |
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| Q |
298 |
aacatgcatcaatcaaaataaagaatgcattggctaattcatatgagag |
346 |
Q |
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| T |
37582054 |
aacatgcatcaatcaaaataaagaatgcattggctaattcatatgagag |
37582006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 37575598 - 37575378
Alignment:
| Q |
1 |
atagagtccaaatct-atgtattatca---aagtgaaaggagacagcaacgtcaaagtgcctggcaaattgcac-accacagagcgcacagctgcagaat |
95 |
Q |
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| T |
37575598 |
atagagtccaaatcttatgtattatcagtaaagtgaaaggagtcagcaacgtcaaagtgcttggcaagttgcacgaccactgagcgcacagcttcagatt |
37575499 |
T |
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| Q |
96 |
ttggtgcaacaaaaataggtagatggg-taggcaaagcagcagatctaattcactttcctcgggtgggcagaaaaaagatatcacggatcggcagaatat |
194 |
Q |
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| T |
37575498 |
ttggtgcaacagaagtaggcagatggggtaggcaaagcggcagatgtaattcactttcctcaggtgggcagaaaaaagatatcacggatcggcagaatat |
37575399 |
T |
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| Q |
195 |
gaatctgtagaataaacaatgc |
216 |
Q |
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| T |
37575398 |
gaatctgtag-ataaacaatgc |
37575378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 408 - 498
Target Start/End: Complemental strand, 37581944 - 37581854
Alignment:
| Q |
408 |
ggatcagttataacttgtgctcatactaaacccatgatagttgatgagcaaagaattgcttcccactcaaagaaagcattggtgatgatgt |
498 |
Q |
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| T |
37581944 |
ggatcagttataacttgtgctcatactaaacccatgatagttgatgagcaaagaattgcttcccactcaaagaaagcattggcgattatgt |
37581854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 411 - 498
Target Start/End: Complemental strand, 37575193 - 37575106
Alignment:
| Q |
411 |
tcagttataacttgtgctcatactaaacccatgatagttgatgagcaaagaattgcttcccactcaaagaaagcattggtgatgatgt |
498 |
Q |
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| T |
37575193 |
tcagttataacttgtgcccatactaaatccatgatagttgatgagcaaagaattacttcccactcggagaaagcattggtgattatgt |
37575106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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