View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_high_6 (Length: 432)
Name: NF16218_high_6
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 414
Target Start/End: Original strand, 42738546 - 42738952
Alignment:
| Q |
12 |
atcatcacgaacttggcaatatatgcaaaatgtaagtttatactatatcaaaccaaattaaaaatctaatgataatatatagtaattata----actcac |
107 |
Q |
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| T |
42738546 |
atcagcacgaacttggcaatatatgcaaaatgtaagtttatactatatcaaaccaaattaaaaatcaaatgataatatatagtaattatatataactcac |
42738645 |
T |
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| Q |
108 |
atggccaccaaattctgatgtaatccagttgggtcttggtactacgttgtaggcaaatttgcagtatgcatttctgtctttgactgaccacttagattcc |
207 |
Q |
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| T |
42738646 |
atggccaccaaattctgatgtaatccagttgggtcttggtactacgttgtaggcaaatttgcagtatgcatttctgtctttgactgaccacttagattcc |
42738745 |
T |
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| Q |
208 |
gggaaaatgctttccttattgcttgcaccttcgggcattatcatctcactacaggcctgtatgtgcaaagtattttttgaatttcattattataccacta |
307 |
Q |
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| T |
42738746 |
gggaaaatgctttccttactgcttgcaccttcgggcattatcatctcactacaggcctgtatgtgcaaagtattttttgaatttcattattataccacta |
42738845 |
T |
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| Q |
308 |
ctaatataatgctttcttcattgtagcagacaaatattgcaaatgagacaattaaaatggaaaattccttcgctaattgaaatatttaggaccaccgatt |
407 |
Q |
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| T |
42738846 |
ctaatataatgctttcttcattgtagcagacaaatattgcaaatgagacaattaaaatggaaaattccttcgctaattgaaatatttaggaccaccgatt |
42738945 |
T |
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| Q |
408 |
ggtagta |
414 |
Q |
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| T |
42738946 |
ggtagta |
42738952 |
T |
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