View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16218_low_11 (Length: 393)

Name: NF16218_low_11
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16218_low_11
NF16218_low_11
[»] chr6 (5 HSPs)
chr6 (22-241)||(7978415-7978634)
chr6 (271-335)||(9402514-9402578)
chr6 (211-250)||(29199903-29199942)
chr6 (208-265)||(34178344-34178401)
chr6 (279-331)||(10925550-10925602)
[»] chr8 (13 HSPs)
chr8 (273-335)||(17108301-17108363)
chr8 (254-335)||(29918532-29918611)
chr8 (273-335)||(5793510-5793572)
chr8 (106-183)||(33631821-33631899)
chr8 (254-335)||(17084191-17084272)
chr8 (271-335)||(6388604-6388668)
chr8 (202-240)||(15173889-15173927)
chr8 (203-265)||(33631909-33631971)
chr8 (273-335)||(36274968-36275029)
chr8 (202-258)||(30481430-30481486)
chr8 (271-335)||(30903971-30904035)
chr8 (211-263)||(30904064-30904116)
chr8 (202-258)||(45236088-45236144)
[»] chr2 (12 HSPs)
chr2 (271-335)||(13531875-13531939)
chr2 (271-335)||(25210303-25210367)
chr2 (271-335)||(34544410-34544474)
chr2 (264-335)||(17845485-17845555)
chr2 (203-258)||(44057907-44057962)
chr2 (273-335)||(29656836-29656898)
chr2 (258-335)||(30696850-30696925)
chr2 (271-334)||(13954672-13954735)
chr2 (271-334)||(14095879-14095942)
chr2 (202-265)||(43371570-43371633)
chr2 (202-258)||(3547190-3547246)
chr2 (273-321)||(42995773-42995821)
[»] chr5 (9 HSPs)
chr5 (106-166)||(39422463-39422524)
chr5 (271-335)||(24207612-24207676)
chr5 (271-335)||(12457442-12457506)
chr5 (272-332)||(16311394-16311453)
chr5 (273-335)||(27900503-27900565)
chr5 (273-327)||(35584050-35584103)
chr5 (273-327)||(38972855-38972909)
chr5 (271-335)||(17153094-17153158)
chr5 (271-299)||(18451985-18452013)
[»] chr7 (12 HSPs)
chr7 (271-334)||(11472811-11472874)
chr7 (202-259)||(42908050-42908107)
chr7 (211-250)||(10990879-10990918)
chr7 (202-250)||(18684010-18684058)
chr7 (202-262)||(37103136-37103196)
chr7 (211-258)||(22973416-22973463)
chr7 (203-258)||(32546220-32546275)
chr7 (202-235)||(29014961-29014994)
chr7 (202-258)||(12980405-12980461)
chr7 (202-258)||(26622979-26623035)
chr7 (208-240)||(28309538-28309570)
chr7 (202-258)||(45380135-45380191)
[»] chr4 (23 HSPs)
chr4 (211-262)||(45065274-45065325)
chr4 (273-335)||(33516174-33516236)
chr4 (274-335)||(37384204-37384265)
chr4 (271-335)||(8843904-8843968)
chr4 (271-335)||(8856868-8856932)
chr4 (271-335)||(9929267-9929331)
chr4 (271-335)||(33616215-33616279)
chr4 (271-335)||(39086087-39086150)
chr4 (271-322)||(9280989-9281040)
chr4 (203-258)||(21544608-21544663)
chr4 (274-322)||(4741318-4741366)
chr4 (271-331)||(21714075-21714135)
chr4 (271-335)||(36919054-36919118)
chr4 (211-258)||(14605944-14605991)
chr4 (271-329)||(21956914-21956971)
chr4 (271-333)||(42907820-42907881)
chr4 (202-250)||(1866559-1866607)
chr4 (202-258)||(9929177-9929233)
chr4 (271-335)||(12075731-12075795)
chr4 (202-250)||(25298843-25298891)
chr4 (202-258)||(29527841-29527897)
chr4 (272-304)||(43553408-43553440)
chr4 (271-327)||(50376451-50376507)
[»] chr1 (10 HSPs)
chr1 (273-335)||(16903441-16903503)
chr1 (271-335)||(42729043-42729107)
chr1 (203-258)||(25154837-25154892)
chr1 (271-335)||(13692570-13692635)
chr1 (271-335)||(36421692-36421756)
chr1 (271-335)||(39219184-39219248)
chr1 (273-332)||(43513130-43513189)
chr1 (273-331)||(5703275-5703332)
chr1 (279-332)||(47644966-47645019)
chr1 (270-331)||(48576216-48576277)
[»] scaffold0059 (1 HSPs)
scaffold0059 (203-265)||(70111-70173)
[»] chr3 (4 HSPs)
chr3 (271-333)||(37032197-37032259)
chr3 (202-265)||(40796147-40796209)
chr3 (274-335)||(27937664-27937725)
chr3 (271-335)||(772893-772956)
[»] scaffold0005 (1 HSPs)
scaffold0005 (211-258)||(211387-211434)
[»] scaffold0013 (1 HSPs)
scaffold0013 (212-258)||(128140-128186)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 7978415 - 7978634
Alignment:
Q  22 gttgtctagtactatatgaagatcaaaatgctcatatttcaagtagtatttcaaacttgatttctaaatatggtatacatctcttagacatggcaacaaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7978415 gttgtctagtactatatgaagatcaaaatgctcatatttcaagtagtatttcaaacttgatttctaaatatggtatacagctcttagacatggcaacaaa 7978514  T
Q  122 gctcatacctgtgggtaccgcccgaatcaaacctaaattgacaggctttttcggctttgactcaccaaatgtcatgactcgtttttcctgatttcaaaat 221  Q
    | ||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7978515 gttcatacccgtggataccgcccgaatcaaacctaaattgacaggttttttcggctttgactcaccaaatgtcatgactcgtttttcccgatttcaaaat 7978614  T
Q  222 acgggtacgggacgtgtaat 241  Q
    ||||||||||||||||||||    
T  7978615 acgggtacgggacgtgtaat 7978634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 9402578 - 9402514
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||||||||||||| || ||| |||||||| ||| ||||  ||||||||||| ||||||||||||    
T  9402578 agaaaatcaatttagtaccccatttatataaatagaaacccaaaccctaaatcatttcactcaca 9402514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 29199903 - 29199942
Alignment:
Q  211 gatttcaaaatacgggtacgggacgtgtaatagggatata 250  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  29199903 gatttcaaaatacgggtacgggacgggtaacagggatata 29199942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 34178344 - 34178401
Alignment:
Q  208 cctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatcccaaa 265  Q
    ||||||||||||| ||||||||| |||| |||| | ||||||| ||||||| ||||||    
T  34178344 cctgatttcaaaacacgggtacgagacgggtaacaaggatataggtacccaccccaaa 34178401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 10925550 - 10925602
Alignment:
Q  279 aatttattatcccttttatatagatataaacttaaaccctaaataatttcact 331  Q
    |||||||||| ||||||||||| ||| || || ||||||||||| ||||||||    
T  10925550 aatttattattccttttatataaatagaatctgaaaccctaaatcatttcact 10925602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 17108363 - 17108301
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||    
T  17108363 aaaatcaatttattatccattttatataaatagaaacttaaaccctaaataatttcactcaca 17108301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 29918611 - 29918532
Alignment:
Q  254 acccatcccaaatgtaaagaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||| |||||||||||||  |||||||||||||| | |||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  29918611 acccgtcccaaatgtaaa--aaatcaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcactcaca 29918532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 5793572 - 5793510
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||||||||| ||||||  ||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  5793572 aaaatcaattaattatcatttttatataaatagaaactcaaaccctaaatcatttcactcaca 5793510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 33631821 - 33631899
Alignment:
Q  106 tagacatggcaacaaagctcatacctgtgggtac-cgcccgaatcaaacctaaattgacaggctttttcggctttgact 183  Q
    |||||||||||||||||| |||||| |||||||| | |||||| |||| |||||||||| || |||| | |||||||||    
T  33631821 tagacatggcaacaaagcccatacccgtgggtacgcacccgaaccaaatctaaattgacgggtttttcccgctttgact 33631899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 17084191 - 17084272
Alignment:
Q  254 acccatcccaaatgtaaagaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||| | |||||||| |||||||||||||| ||| ||||||||| ||||||||  || |||||||| ||| | ||||||    
T  17084191 acccatcacgaatgtaaaaaaaatcaatttattgtcctttttatataaatataaacccaagccctaaattattcccctcaca 17084272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 6388604 - 6388668
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||||||| || ||||||||| | | ||||  ||||||||||| ||||||||||||    
T  6388604 agaaaatcaatttattacccattttatataaacagaaacccaaaccctaaatcatttcactcaca 6388668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 15173889 - 15173927
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaa 240  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  15173889 gtttttcccgatttcaaaatacgggtacgggacgggtaa 15173927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 33631909 - 33631971
Alignment:
Q  203 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatcccaaa 265  Q
    |||| |||||| |||||| | ||||| |||||| ||||| |||||||||||||||| ||||||    
T  33631909 ttttacctgatctcaaaacatgggtatgggacgagtaatggggatataagtacccaccccaaa 33631971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 36275029 - 36274968
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||||||||||| ||||||||||||||| ||| ||||   |||||||||| ||||||||||||    
T  36275029 aaaatcaatttactatcccttttatataaatagaaac-ccaaccctaaatcatttcactcaca 36274968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 30481430 - 30481486
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    ||||||||||||||||||||||| ||| | |||| |||||  ||||||| |||||||    
T  30481430 gtttttcctgatttcaaaatacgagtatgagacgagtaatgaggatataggtaccca 30481486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 30904035 - 30903971
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||||||||||||||||  | ||||||||| ||| ||||  ||||| ||||| ||||||||||||    
T  30904035 agaaaatcaatttattacacattttatataaatagaaaccaaaaccttaaatcatttcactcaca 30903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 30904116 - 30904064
Alignment:
Q  211 gatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatccca 263  Q
    |||||||||| ||||||||| |||| ||||| | |||||||||||||| ||||    
T  30904116 gatttcaaaacacgggtacgagacgggtaatggagatataagtacccacccca 30904064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 45236144 - 45236088
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    ||||| ||||||||||||| ||||||| |||||| ||||| || ||||| |||||||    
T  45236144 gttttccctgatttcaaaacacgggtatgggacgggtaatgggtatataggtaccca 45236088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 13531939 - 13531875
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||||||||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  13531939 agaaaatcaatttattatccattttatataaatagaaactcaaaccctaaatcatttcactcaca 13531875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 25210367 - 25210303
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||| ||| || ||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  25210367 agaaaatcaatttgttacccattttatataaatagaaactcaaaccctaaatcatttcactcaca 25210303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 34544410 - 34544474
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||||||| |||||||| || ||||||||| ||| ||||| |||||||||||||||||| |||||    
T  34544410 agaaaatctatttattacccattttatataaataaaaactcaaaccctaaataatttcattcaca 34544474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 17845485 - 17845555
Alignment:
Q  264 aatgtaaagaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||||||| |||||||||||||||||| ||||||||| ||| |||||  || ||||||| ||||||||||||    
T  17845485 aatgtaaa-aaaatcaatttattatcctttttatataaatagaaactccaaacctaaatcatttcactcaca 17845555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 44057962 - 44057907
Alignment:
Q  203 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    |||| |||||||||||||||| ||||||||||| ||||| |||||||| |||||||    
T  44057962 ttttccctgatttcaaaataccggtacgggacgggtaatggggatatatgtaccca 44057907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 29656836 - 29656898
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||||||||||||||||||||||||||| ||| ||||   |||||||||| |||| |||||||    
T  29656836 aaaatcaatttattatcccttttatataaataaaaaccataaccctaaatcatttgactcaca 29656898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 30696925 - 30696850
Alignment:
Q  258 atcccaaatgtaaagaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||||  |||||||||||||| || ||||||||| ||| ||| | ||||||||||| || |||||||||    
T  30696925 atcccaaatgtaaa--aaatcaatttattacccattttatataaatagaaattcaaaccctaaatcatgtcactcaca 30696850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 13954735 - 13954672
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcac 334  Q
    |||||||||| |||||| | |||||||||| ||| |||||  |||||||||| |||||||||||    
T  13954735 agaaaatcaacttattaccacttttatataaatagaaactcgaaccctaaatcatttcactcac 13954672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 14095942 - 14095879
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcac 334  Q
    |||||||||| |||||| | |||||||||| ||| |||||  |||||||||| |||||||||||    
T  14095942 agaaaatcaacttattaccacttttatataaatagaaactcgaaccctaaatcatttcactcac 14095879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 43371633 - 43371570
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatcccaaa 265  Q
    ||||| || ||||| ||||||||||||||||||| ||||  |||||||| ||||||| ||||||    
T  43371633 gttttccccgattttaaaatacgggtacgggacgggtaacggggatatatgtacccaccccaaa 43371570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 3547246 - 3547190
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    |||||| | ||||||||||||||||||||||||| ||||  | |||||| |||||||    
T  3547246 gtttttaccgatttcaaaatacgggtacgggacgggtaacggagatatatgtaccca 3547190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 42995821 - 42995773
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaa 321  Q
    ||||| ||||||||||| |||||||||| ||| ||||||||||| ||||    
T  42995821 aaaattaatttattatctcttttatataaataaaaacttaaaccgtaaa 42995773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 39422524 - 39422463
Alignment:
Q  106 tagacatggcaacaaagctcatacctgtgggt-accgcccgaatcaaacctaaattgacagg 166  Q
    |||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||||    
T  39422524 tagacatggcaacaaagctcatacctgtgggtaaccgcccgaaccacacccaaattgacagg 39422463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 24207676 - 24207612
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||| |||||||||  ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  24207676 agaaaattaatttattaatccttttatataaataaaaactaaaaccctaaataacttcactcaca 24207612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 12457506 - 12457442
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||||||| |||||| ||||| ||| |||| ||||  |||||| ||||||||||||    
T  12457506 agaaaatcaatttattacccctttaatataaatagaaacctaaagtctaaatcatttcactcaca 12457442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 16311394 - 16311453
Alignment:
Q  272 gaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactc 332  Q
    ||||||||||||||||||||||||||||| ||| ||||  ||||||||||| |||| ||||    
T  16311394 gaaaatcaatttattatcccttttatataaatagaaac-caaaccctaaatcattttactc 16311453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 27900503 - 27900565
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||||  | |||||||||| ||| ||||| ||||||||||| |||||| |||||    
T  27900503 aaaatcaatttatttcctcttttatataaatagaaactgaaaccctaaatcatttcagtcaca 27900565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 35584103 - 35584050
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataattt 327  Q
    ||||||||||||||| |||||||||||| ||| ||||| ||||||||||| ||||    
T  35584103 aaaatcaatttatta-cccttttatataaatagaaactcaaaccctaaatcattt 35584050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 38972909 - 38972855
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataattt 327  Q
    ||||||||||||||| |||||||||||| ||  ||||| ||||||||||| ||||    
T  38972909 aaaatcaatttattaacccttttatataaatcgaaactgaaaccctaaatcattt 38972855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 17153158 - 17153094
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||||||| ||||| || ||| ||| |||   ||| ||||||||||||||||||||    
T  17153158 agaaaatcaatttattaccccttctagataaatagaaatccaaaacctaaataatttcactcaca 17153094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 18451985 - 18452013
Alignment:
Q  271 agaaaatcaatttattatcccttttatat 299  Q
    |||||||||||||||||||||||||||||    
T  18451985 agaaaatcaatttattatcccttttatat 18452013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 11472811 - 11472874
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcac 334  Q
    |||||||||||||||||| ||||||||||| ||| ||||  ||||||||||| |||||||||||    
T  11472811 agaaaatcaatttattataccttttatataaatagaaaccaaaaccctaaatcatttcactcac 11472874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 42908050 - 42908107
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccat 259  Q
    ||||| || ||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  42908050 gttttccccgatttcaaaatacgggtacgggacgggtaatggggatatatgtacccat 42908107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 10990879 - 10990918
Alignment:
Q  211 gatttcaaaatacgggtacgggacgtgtaatagggatata 250  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  10990879 gatttcaaaatacgggtacgggacgggtaatagggatata 10990918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 18684058 - 18684010
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatata 250  Q
    ||||| || ||||||||||||||||||||||||| |||| |||||||||    
T  18684058 gttttccccgatttcaaaatacgggtacgggacgggtaacagggatata 18684010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 37103136 - 37103196
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatccc 262  Q
    |||||||||||||||||||||||||||||||| | ||||   ||||||| | |||||||||    
T  37103136 gtttttcctgatttcaaaatacgggtacgggaagggtaacgaggatatatgcacccatccc 37103196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 22973463 - 22973416
Alignment:
Q  211 gatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    ||||||||||||||||||||||||| ||||| |||||||  |||||||    
T  22973463 gatttcaaaatacgggtacgggacgggtaatggggatatctgtaccca 22973416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 32546275 - 32546220
Alignment:
Q  203 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    ||||||| ||||||||||||||||||||| ||| ||||  |||||||| |||||||    
T  32546275 tttttcccgatttcaaaatacgggtacggaacgggtaacggggatatatgtaccca 32546220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 29014961 - 29014994
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacg 235  Q
    |||||||| |||||||||||||||||||||||||    
T  29014961 gtttttcccgatttcaaaatacgggtacgggacg 29014994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 12980461 - 12980405
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    ||||| || |||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  12980461 gttttccccgatttcaaaacacgggtatgggacgggtaatgggtatataagtaccca 12980405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 26623035 - 26622979
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    ||||| ||||||||||||| ||||||| |||| | ||||| || |||||||||||||    
T  26623035 gttttccctgatttcaaaacacgggtatgggatgggtaatgggtatataagtaccca 26622979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 28309570 - 28309538
Alignment:
Q  208 cctgatttcaaaatacgggtacgggacgtgtaa 240  Q
    |||||||||||||||||||||||||||| ||||    
T  28309570 cctgatttcaaaatacgggtacgggacgggtaa 28309538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 45380191 - 45380135
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    |||||||| |||||||||||||||||| |||||| ||||  || ||||| |||||||    
T  45380191 gtttttcccgatttcaaaatacgggtatgggacgggtaacgggtatataggtaccca 45380135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 45065325 - 45065274
Alignment:
Q  211 gatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatccc 262  Q
    ||||||||||||||||||||||||| |||| ||||||||| |||||||||||    
T  45065325 gatttcaaaatacgggtacgggacgagtaacagggatatatgtacccatccc 45065274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 33516174 - 33516236
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||| ||||| |||||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  33516174 aaaatcaatgtattaccccttttatataaataaaaactcaaaccctaaatcatttcactcaca 33516236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 37384265 - 37384204
Alignment:
Q  274 aaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||||||||||||||||| ||| ||  | ||||||||||| ||||||||||||    
T  37384265 aaatcaatttattatcccttttatataaatagaagttcaaaccctaaatcatttcactcaca 37384204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 8843904 - 8843968
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||| ||||||||| |||||| ||||| ||| ||||||||| ||||||| ||||||||||||    
T  8843904 agaaaattaatttattacccctttcatataaatagaaacttaaatcctaaatcatttcactcaca 8843968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 8856868 - 8856932
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||| ||||||||| |||||| ||||| ||| ||||||||| ||||||| ||||||||||||    
T  8856868 agaaaattaatttattacccctttcatataaatagaaacttaaatcctaaatcatttcactcaca 8856932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 9929267 - 9929331
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||||||| | |||  ||||| ||||||||| |||| |||||||||||||||||||    
T  9929267 agaaaatcaatttattacctcttccatataaatataaactgaaactctaaataatttcactcaca 9929331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 33616215 - 33616279
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||||||| |||||||||||| ||| |||   ||||||||||| ||||||||||||    
T  33616215 agaaaatcaatttattaccccttttatataaataaaaatcaaaaccctaaatcatttcactcaca 33616279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 39086150 - 39086087
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||||||||||||| || || ||||||||| ||| ||||||||||||||||| ||||||||||||    
T  39086150 agaaaatcaatttacta-cctttttatataaatagaaacttaaaccctaaatcatttcactcaca 39086087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 9280989 - 9281040
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaat 322  Q
    ||||||| |||||||||||||||||||||||||| ||| | |||||||||||    
T  9280989 agaaaataaatttattatcccttttatatagatagaaattcaaaccctaaat 9281040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 21544663 - 21544608
Alignment:
Q  203 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    ||||||| ||||||||||||||||||||||||  ||||| |||||||| |||||||    
T  21544663 tttttcccgatttcaaaatacgggtacgggacaggtaatggggatatatgtaccca 21544608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 4741318 - 4741366
Alignment:
Q  274 aaatcaatttattatcccttttatatagatataaacttaaaccctaaat 322  Q
    ||||||||||||||||| ||||||||| ||| ||||| |||||||||||    
T  4741318 aaatcaatttattatccattttatataaatagaaactcaaaccctaaat 4741366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 21714075 - 21714135
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcact 331  Q
    ||||||| ||||||||| | |||||||||| ||| ||||| ||||||||||| ||||||||    
T  21714075 agaaaattaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcact 21714135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 36919118 - 36919054
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||| ||||||| | |||||||||| ||| ||||| |||| |||||| ||||||||||||    
T  36919118 agaaaatcagtttattaccacttttatataaatagaaactcaaactctaaatcatttcactcaca 36919054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 14605944 - 14605991
Alignment:
Q  211 gatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    |||||||||||||||||||| |||| |||| ||||||||| |||||||    
T  14605944 gatttcaaaatacgggtacgagacgggtaacagggatatatgtaccca 14605991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 21956914 - 21956971
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttca 329  Q
    ||||||||||||||||| |||||||||||| ||| ||||  ||||||||||| ||||||    
T  21956914 agaaaatcaatttatta-cccttttatataaataaaaacccaaaccctaaatcatttca 21956971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 42907881 - 42907820
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactca 333  Q
    |||||||||||||| || | |||||||||| ||| ||||| ||||||||||| ||||||||||    
T  42907881 agaaaatcaatttacta-ctcttttatataaatagaaactcaaaccctaaatcatttcactca 42907820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 1866559 - 1866607
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatata 250  Q
    |||||||| |||||||||||||||||||| |||| |||||  |||||||    
T  1866559 gtttttcccgatttcaaaatacgggtacgagacgggtaatgcggatata 1866607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 9929177 - 9929233
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    |||||||||||||||||||||||||||  | ||| |||| | ||||||| |||||||    
T  9929177 gtttttcctgatttcaaaatacgggtatagtacgggtaacatggatataggtaccca 9929233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 12075731 - 12075795
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||||||| || ||||||||| ||| ||||| |||| || ||| ||||||| ||||    
T  12075731 agaaaatcaatttattacccattttatataaatagaaactaaaactctgaatcatttcacccaca 12075795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 25298843 - 25298891
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatata 250  Q
    |||||||| |||||||||| |||||||||||| | ||||| ||||||||    
T  25298843 gtttttccggatttcaaaacacgggtacgggatgggtaatggggatata 25298891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 29527897 - 29527841
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    ||||| || |||||||||||||||||||| |||| ||||  |||||||| |||||||    
T  29527897 gttttccccgatttcaaaatacgggtacgtgacgggtaacggggatatatgtaccca 29527841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 43553440 - 43553408
Alignment:
Q  272 gaaaatcaatttattatcccttttatatagata 304  Q
    |||||||||||||||| ||||||||||||||||    
T  43553440 gaaaatcaatttattaccccttttatatagata 43553408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 50376451 - 50376507
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataattt 327  Q
    |||||||||||||||| ||| ||||||||| ||| ||||| |||| |||||| ||||    
T  50376451 agaaaatcaatttattttccattttatataaatagaaactaaaacgctaaattattt 50376507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 16903503 - 16903441
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||||  || ||||||||| ||||||||| ||||||||||| ||||||||||||    
T  16903503 aaaatcaatttattgccctttttatataaatataaactcaaaccctaaattatttcactcaca 16903441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 42729043 - 42729107
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||| ||||||| |||||||||||||| ||| ||||||| || |||||| ||||||||||||    
T  42729043 agaaaataaatttatcatcccttttatataaatagaaacttatacactaaatcatttcactcaca 42729107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 25154837 - 25154892
Alignment:
Q  203 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    ||||||| |||||||||| ||| |||||||||| ||||| ||||||||||||||||    
T  25154837 tttttcccgatttcaaaacacgagtacgggacgagtaatggggatataagtaccca 25154892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 13692635 - 13692570
Alignment:
Q  271 agaaaatcaattt-attatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||| ||||||||||||||||| ||| ||||  ||||||||||| ||||||| ||||    
T  13692635 agaaaatcaattttattatcccttttatataaatagaaaccaaaaccctaaatcatttcacccaca 13692570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 36421756 - 36421692
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||||||||||||||||||||| ||||||| ||| |||||  ||| |||||| |||||| |||||    
T  36421756 agaaaatcaatttattatccctcttatataaataaaaactcgaactctaaatcatttcattcaca 36421692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 39219248 - 39219184
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||| ||||||||| | |||||||||| ||| ||||| ||||||||||| ||||| ||||||    
T  39219248 agaaaattaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcgctcaca 39219184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 43513130 - 43513189
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactc 332  Q
    ||||||||||||| |  | ||||||||| ||| ||||| |||||||||||||||||||||    
T  43513130 aaaatcaatttataactctttttatataaatagaaactcaaaccctaaataatttcactc 43513189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 5703275 - 5703332
Alignment:
Q  273 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcact 331  Q
    ||||||||||||||||  |||||||||| ||||||||| ||| ||||||| ||||||||    
T  5703275 aaaatcaatttattatatcttttatata-atataaactcaaatcctaaatcatttcact 5703332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 47644966 - 47645019
Alignment:
Q  279 aatttattatcccttttatatagatataaacttaaaccctaaataatttcactc 332  Q
    |||||||||||||||||||||| ||| ||||| | | ||||||| |||||||||    
T  47644966 aatttattatcccttttatataaatagaaactcagatcctaaatcatttcactc 47645019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 48576216 - 48576277
Alignment:
Q  270 aagaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcact 331  Q
    |||||||||||||||| |||| |||| |||| ||| || || ||||||||||| ||||||||    
T  48576216 aagaaaatcaatttataatcctttttgtataaataaaatctcaaaccctaaatcatttcact 48576277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 70173 - 70111
Alignment:
Q  203 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatcccaaa 265  Q
    ||||||||||||||| ||||||||||||||||| ||||   ||||||| ||||||| ||||||    
T  70173 tttttcctgatttcataatacgggtacgggacgggtaacgaggatatatgtacccaccccaaa 70111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 37032197 - 37032259
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactca 333  Q
    ||||||| ||||||||| || ||||||||| ||| ||||| ||||||||||| ||||||||||    
T  37032197 agaaaattaatttattacccattttatataaataaaaactcaaaccctaaatcatttcactca 37032259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 40796147 - 40796209
Alignment:
Q  202 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatcccaaa 265  Q
    |||||||| ||||||||||||||||||||||||| |||||  ||||| | ||||||| ||||||    
T  40796147 gtttttcc-gatttcaaaatacgggtacgggacgggtaatgaggatacatgtacccaccccaaa 40796209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 27937725 - 27937664
Alignment:
Q  274 aaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    |||| |||||||||   |||||||||| ||| |||| |||||||||||| ||||||||||||    
T  27937725 aaattaatttattacagcttttatataaatagaaacctaaaccctaaatcatttcactcaca 27937664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 772893 - 772956
Alignment:
Q  271 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 335  Q
    ||||||||||||||||| ||||||| |||| ||| ||||| ||||| | ||| ||||||||||||    
T  772893 agaaaatcaatttatta-cccttttgtataaatagaaactcaaaccttgaatcatttcactcaca 772956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 211434 - 211387
Alignment:
Q  211 gatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    |||||||||||||||||||| |||| |||| ||||||||| |||||||    
T  211434 gatttcaaaatacgggtacgagacgggtaacagggatatatgtaccca 211387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 128140 - 128186
Alignment:
Q  212 atttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 258  Q
    |||||| ||||||||||||||||| ||||| |||||||| |||||||    
T  128140 atttcataatacgggtacgggacgggtaatggggatatatgtaccca 128186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University