View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16218_low_14 (Length: 350)

Name: NF16218_low_14
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16218_low_14
NF16218_low_14
[»] chr2 (19 HSPs)
chr2 (9-335)||(39223119-39223445)
chr2 (9-124)||(39192190-39192307)
chr2 (9-124)||(39197872-39197987)
chr2 (174-267)||(39216139-39216232)
chr2 (184-266)||(39162358-39162440)
chr2 (184-266)||(39206754-39206836)
chr2 (172-259)||(39191933-39192020)
chr2 (172-245)||(39388604-39388677)
chr2 (172-265)||(39370601-39370695)
chr2 (4-112)||(39370345-39370451)
chr2 (298-336)||(39162964-39163002)
chr2 (298-336)||(39206192-39206230)
chr2 (25-90)||(39388879-39388944)
chr2 (25-90)||(39162076-39162140)
chr2 (197-250)||(39197623-39197676)
chr2 (25-90)||(39207054-39207118)
chr2 (298-335)||(39387948-39387985)
chr2 (8-48)||(39381276-39381316)
chr2 (173-217)||(39414266-39414310)
[»] chr5 (2 HSPs)
chr5 (298-335)||(33561983-33562020)
chr5 (24-120)||(33561251-33561348)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 39223119 - 39223445
Alignment:
Q  9 taattctttaagaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcacatccacaaagtgtcaaact 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39223119 taattctttaagaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcacatccacaaactgtcaaact 39223218  T
Q  109 aatttggattatcttgctactgctattgaaagattagtttagtatattaatgtagttttaattacattgagaggcacttaatagtccaattagtgcaact 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39223219 aatttggattatcttgctactgctattgaaagattagtttagtatattaatgtagttctaattacattgagaggcacttaatagtccaattagtgcaact 39223318  T
Q  209 atttttagtcttgtttattaatcaataaaatctaacactttctccgttgattcagttaacttgcatactannnnnnnnnnnnnnnaaagtcttattgtca 308  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||               |||||||||||||||    
T  39223319 atttttagtcttgtttattaatcaataaaatctaacaccttctccgttgattcagttaacttgcatactattttttttattttttaaagtcttattgtca 39223418  T
Q  309 ctatcatttactgatgtttctataaat 335  Q
    |||||||||||||||||||||||||||    
T  39223419 ctatcatttactgatgtttctataaat 39223445  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 39192307 - 39192190
Alignment:
Q  9 taattctttaagaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcacatccacaaa--gtgtcaaa 106  Q
    ||||||||||| || ||||||||||||||||||||| ||| |||||| |||||| ||||| ||||||||||||| ||||||||||||| |  ||||||||    
T  39192307 taattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttccagttttcatatcacatccacagactgtgtcaaa 39192208  T
Q  107 ctaatttggattatcttg 124  Q
    ||||||| ||||||||||    
T  39192207 ctaatttcgattatcttg 39192190  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 39197987 - 39197872
Alignment:
Q  9 taattctttaagaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcacatccacaaagtgtcaaact 108  Q
    ||||||||||| || ||||||||||||||||||||| ||| |||||| |||||| ||||| |||||| |||||| | ||||||||||| | |||||||||    
T  39197987 taattctttaaaaacatttttaatcatgttaatgttctatgtattagtcaatttgaaaagattttcccgttttcatttcacatccacagactgtcaaact 39197888  T
Q  109 aatttggattatcttg 124  Q
    ||||| ||||||||||    
T  39197887 aatttcgattatcttg 39197872  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 267
Target Start/End: Original strand, 39216139 - 39216232
Alignment:
Q  174 attgagaggcacttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacactttctccgttgattcagttaa 267  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||| | |||||| ||||||||||||    
T  39216139 attgaggggcacttaatagtccaattagtgcaactatttctagtcttgtttatcaatcgatgaaatctaacattgtctccggtgattcagttaa 39216232  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 39162358 - 39162440
Alignment:
Q  184 acttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacactttctccgttgattcagtta 266  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  39162358 acttaatagtcctattagtgcaactattaatagtcttgtttattaatcaatgaaatctaacactttctaccttgattcagtta 39162440  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 39206836 - 39206754
Alignment:
Q  184 acttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacactttctccgttgattcagtta 266  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  39206836 acttaatagtcctattagtgcaactattaatagtcttgtttattaatcaatgaaatctaacactttctaccttgattcagtta 39206754  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 39192020 - 39191933
Alignment:
Q  172 acattgagaggcacttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaacactttctccgttgat 259  Q
    ||||| || ||||||||||||||| |||||||||||||||| | ||||| ||||||||||||| |||||| ||||||||| |||||||    
T  39192020 acattaaggggcacttaatagtcctattagtgcaactatttctcgtcttatttattaatcaattaaatctcacactttctacgttgat 39191933  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 39388677 - 39388604
Alignment:
Q  172 acattgagaggcacttaatagtccaattagtgcaactatttttagtcttgtttattaatcaataaaatctaaca 245  Q
    |||||||| ||||||||||||||| || ||||| ||||||| |||||||| |||||||||||| || |||||||    
T  39388677 acattgaggggcacttaatagtcctatcagtgctactatttctagtcttgcttattaatcaatgaactctaaca 39388604  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 39370601 - 39370695
Alignment:
Q  172 acattgagaggcacttaatagtccaattagtgcaactatttttagtcttgtt-tattaatcaataaaatctaacactttctccgttgattcagtt 265  Q
    |||||||| ||||||||||| ||| ||||||||||||| || ||||||||||  |||||| ||| ||||||| |||| |||||  ||||||||||    
T  39370601 acattgaggggcacttaataatcctattagtgcaactacttctagtcttgttggattaatgaatgaaatctatcactctctcctgtgattcagtt 39370695  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 39370345 - 39370451
Alignment:
Q  4 ctatataattctttaagaatatttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcacatccacaaagtgtc 103  Q
    ||||||| |||| ||| || ||| ||||||||||||||||||||| | || | |||||| ||||||||||||| ||| | ||||||| ||||| |  |||    
T  39370345 ctatatagttctataaaaacattcttaatcatgttaatgttgtatgtcttggtcaatttaaaaagcttttccaatttacatatcacacccacaca--gtc 39370442  T
Q  104 aaactaatt 112  Q
    |||||||||    
T  39370443 aaactaatt 39370451  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 39162964 - 39163002
Alignment:
Q  298 tcttattgtcactatcatttactgatgtttctataaatt 336  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  39162964 tcttattgtcactatcatttactgatgtttccataaatt 39163002  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 39206230 - 39206192
Alignment:
Q  298 tcttattgtcactatcatttactgatgtttctataaatt 336  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  39206230 tcttattgtcactatcatttactgatgtttccataaatt 39206192  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 39388944 - 39388879
Alignment:
Q  25 tttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcaca 90  Q
    |||||||||||||||||||||||| |  ||| |||||| ||| |||||||||| |||| |||||||    
T  39388944 tttttaatcatgttaatgttgtatgtcatagtcaatttgaaatgcttttccagatttcatatcaca 39388879  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 39162076 - 39162140
Alignment:
Q  25 tttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcaca 90  Q
    |||||| ||||||||||||||||| | |||| | |||| |||||||||||||| |||| |||||||    
T  39162076 tttttactcatgttaatgttgtatgtcttagtc-atttgaaaagcttttccagatttcatatcaca 39162140  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 39197676 - 39197623
Alignment:
Q  197 attagtgcaactatttttagtcttgtttattaatcaataaaatctaacactttc 250  Q
    |||||||||||||||| ||||||| || | |||||||| | |||||||||||||    
T  39197676 attagtgcaactatttctagtcttattcaataatcaattagatctaacactttc 39197623  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 39207118 - 39207054
Alignment:
Q  25 tttttaatcatgttaatgttgtatatattagacaattttaaaagcttttccagttttcgtatcaca 90  Q
    |||||| ||||||||||||||||| | |||| || ||| |||||||||||||| |||| |||||||    
T  39207118 tttttactcatgttaatgttgtatgtcttagtca-tttgaaaagcttttccagatttcatatcaca 39207054  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 39387985 - 39387948
Alignment:
Q  298 tcttattgtcactatcatttactgatgtttctataaat 335  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  39387985 tcttattgtcactatcatttactgatgcttctgtaaat 39387948  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 39381316 - 39381276
Alignment:
Q  8 ataattctttaagaatatttttaatcatgttaatgttgtat 48  Q
    ||||||| |||| ||||||||||||| ||||||||||||||    
T  39381316 ataattcattaaaaatatttttaatcgtgttaatgttgtat 39381276  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 39414310 - 39414266
Alignment:
Q  173 cattgagaggcacttaatagtccaattagtgcaactatttttagt 217  Q
    ||||||| ||||||||||||||| || ||||||||||||| ||||    
T  39414310 cattgaggggcacttaatagtcctatcagtgcaactatttatagt 39414266  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 33561983 - 33562020
Alignment:
Q  298 tcttattgtcactatcatttactgatgtttctataaat 335  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  33561983 tcttactgtcactatcatttactgatgtttctataaat 33562020  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 33561251 - 33561348
Alignment:
Q  24 atttttaatcatgttaatg-ttgtatatattagacaattttaaaagcttttccagttttcgtatcacatccacaaagtgtcaaactaatttggattat 120  Q
    ||||||||||||||||||| |||||| | || | |||||| |||||||||| | | |||| ||||||| ||||| | | ||| |||||| ||||||||    
T  33561251 atttttaatcatgttaatgtttgtatgtcttggtcaatttgaaaagcttttactgatttcatatcacacccacagactttcagactaatctggattat 33561348  T

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