View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16218_low_16 (Length: 312)
Name: NF16218_low_16
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 48 - 248
Target Start/End: Original strand, 47828662 - 47828862
Alignment:
| Q |
48 |
acaacaattgcattattatttctctgattacttatgtgtttaatcaataatctctgataacagatatatattgaaattgaagagaattcaggaacaacag |
147 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47828662 |
acaacaattgcattattgtttctctgattacttatgtgtttaatcaataatctctgataacagatatatattgaaattgaagagaattcaggaaccacag |
47828761 |
T |
|
| Q |
148 |
cagcaaagctatccaaggacttagaagaatatggcatccttatcatgccaatgggatcatcaaggtcttgtctgtcacactctgcattgttactaataat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47828762 |
cagcaaagctatccaaggacttagaagaatatggcatacttatcatgccaatgggaacatcaaggtcttgtctgtcacactctgcattgttactaataat |
47828861 |
T |
|
| Q |
248 |
t |
248 |
Q |
| |
|
| |
|
|
| T |
47828862 |
t |
47828862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 47828885 - 47828939
Alignment:
| Q |
247 |
ttattaaagtaatttattcatatgaatcgtatcgtatcaaatttcattggttcat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47828885 |
ttattaaagtaatttattcatatgaatcttatcgtatcaaatttcattggttcat |
47828939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University