View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_low_19 (Length: 262)
Name: NF16218_low_19
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 43217829 - 43218079
Alignment:
| Q |
1 |
ttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctgggagccagatggaca |
100 |
Q |
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| T |
43217829 |
ttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctggcagccagatggaca |
43217928 |
T |
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| Q |
101 |
catttaagccattggtttcatgaattccattgtccagctctgggatacatctactatgacacgggtaaatgctgctcgtgttctttgtattgtttttaaa |
200 |
Q |
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| T |
43217929 |
cattttagccattggtttgatgaattccattgtccagctctgggatacatctactatgacacgggtaaa--ctgcttgtgttctttgtattgtttttaaa |
43218026 |
T |
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| Q |
201 |
cttgaaattgttctctactctcatgtttgtgtggttttattttggtctctgct |
253 |
Q |
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| T |
43218027 |
cttgaaattgttctctattctcatgtttgtgtggttttattttggtcactgct |
43218079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 43170507 - 43170257
Alignment:
| Q |
1 |
ttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctgggagccagatggaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43170507 |
ttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctggcagccagatggaca |
43170408 |
T |
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| Q |
101 |
catttaagccattggtttcatgaattccattgtccagctctgggatacatctactatgacacgggtaaatgctgctcgtgttctttgtattgtttttaaa |
200 |
Q |
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| T |
43170407 |
cattttagccattggtttgatgaattccattgtccagctctgggatacatctactatgacacgggtaaa--ctgcttgtgttctttgtattgtttttaaa |
43170310 |
T |
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| Q |
201 |
cttgaaattgttctctactctcatgtttgtgtggttttattttggtctctgct |
253 |
Q |
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| T |
43170309 |
cttgaaatttttctctattctcatgtttgtgtggttttattttggtcactgct |
43170257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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