View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16218_low_21 (Length: 255)

Name: NF16218_low_21
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16218_low_21
NF16218_low_21
[»] chr2 (19 HSPs)
chr2 (1-149)||(39222879-39223027)
chr2 (1-149)||(39192341-39192489)
chr2 (1-149)||(39198021-39198169)
chr2 (28-149)||(39388996-39389117)
chr2 (28-145)||(39161905-39162022)
chr2 (28-145)||(39207172-39207289)
chr2 (54-149)||(39215721-39215813)
chr2 (1-51)||(39161836-39161886)
chr2 (1-51)||(39207308-39207358)
chr2 (1-58)||(39389129-39389186)
chr2 (65-142)||(39421677-39421754)
chr2 (63-111)||(39473285-39473333)
chr2 (85-126)||(39468447-39468488)
chr2 (71-119)||(39137997-39138045)
chr2 (63-130)||(39381368-39381435)
chr2 (79-121)||(39370243-39370285)
chr2 (63-124)||(39152694-39152755)
chr2 (71-124)||(39459379-39459432)
chr2 (61-105)||(39397731-39397775)
[»] chr6 (1 HSPs)
chr6 (61-140)||(16113416-16113495)
[»] chr5 (2 HSPs)
chr5 (58-147)||(33561107-33561196)
chr5 (1-58)||(33561008-33561065)
[»] chr7 (1 HSPs)
chr7 (71-118)||(19807947-19807994)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 39222879 - 39223027
Alignment:
Q  1 aaggagctcaacttaaaagaaaagtggtttgaaggacaagtcaaggatcctgtgtcaaggaaaaaatatattgatgaagaaaaagaatcgggtaaatgtt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39222879 aaggagctcaacttcaaagaaaagtggtttgaaggacaagtcaaggatcctgtgtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgtt 39222978  T
Q  101 cttattcatcttgtttattgaaaaaatttctttacaactgttcctctta 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39222979 cttattcatcttgtttattgaaaaaatttctttacaactgttcctctta 39223027  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 39192489 - 39192341
Alignment:
Q  1 aaggagctcaacttaaaagaaaagtggtttgaaggacaagtcaaggatcctgtgtcaaggaaaaaatatattgatgaagaaaaagaatcgggtaaatgtt 100  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||     
T  39192489 aaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtg 39192390  T
Q  101 cttattcatcttgtttattgaaaaaatttctttacaactgttcctctta 149  Q
    |||||||||||| |||||||| | |||||| || ||||| |||||||||    
T  39192389 cttattcatcttatttattgacagaatttcattgcaactattcctctta 39192341  T

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Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 39198169 - 39198021
Alignment:
Q  1 aaggagctcaacttaaaagaaaagtggtttgaaggacaagtcaaggatcctgtgtcaaggaaaaaatatattgatgaagaaaaagaatcgggtaaatgtt 100  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||     
T  39198169 aaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcctgcgtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtg 39198070  T
Q  101 cttattcatcttgtttattgaaaaaatttctttacaactgttcctctta 149  Q
    |||||||||||| |||||||| | |||||| || ||||| |||||||||    
T  39198069 cttattcatcttatttattgacagaatttcattgcaactattcctctta 39198021  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 39389117 - 39388996
Alignment:
Q  28 tttgaaggacaagtcaaggatcctgtgtcaaggaaaaaatatattgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaat 127  Q
    ||||| |||||| | ||||| || | |||||||||||||||| ||||||  ||||||||||| ||||||||||||||||||||  ||||||||||| |||    
T  39389117 tttgatggacaaataaaggagcccgagtcaaggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattcatccagtttattgaaagaat 39389018  T
Q  128 ttctttacaactgttcctctta 149  Q
    || |||||||||||||||||||    
T  39389017 ttttttacaactgttcctctta 39388996  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 39161905 - 39162022
Alignment:
Q  28 tttgaaggacaagtcaaggatcctgtgtcaaggaaaaaatatattgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaat 127  Q
    ||||| |||||| | ||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| | ||||||||| |||    
T  39161905 tttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaat 39162004  T
Q  128 ttctttacaactgttcct 145  Q
    ||  ||| ||||||||||    
T  39162005 tttattataactgttcct 39162022  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 39207289 - 39207172
Alignment:
Q  28 tttgaaggacaagtcaaggatcctgtgtcaaggaaaaaatatattgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaat 127  Q
    ||||| |||||| | ||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| | ||||||||| |||    
T  39207289 tttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaat 39207190  T
Q  128 ttctttacaactgttcct 145  Q
    ||  ||| ||||||||||    
T  39207189 tttattataactgttcct 39207172  T

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Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 39215721 - 39215813
Alignment:
Q  54 gtcaaggaaaaaatatattgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctctta 149  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||    
T  39215721 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta 39215813  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39161836 - 39161886
Alignment:
Q  1 aaggagctcaacttaaaagaaaagtggtttgaaggacaagtcaaggatcct 51  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  39161836 aaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcct 39161886  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 39207358 - 39207308
Alignment:
Q  1 aaggagctcaacttaaaagaaaagtggtttgaaggacaagtcaaggatcct 51  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  39207358 aaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcct 39207308  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 39389186 - 39389129
Alignment:
Q  1 aaggagctcaacttaaaagaaaagtggtttgaaggacaagtcaaggatcctgtgtcaa 58  Q
    ||||||||||||||||||||||||  ||||||||| |||||||| ||||||| |||||    
T  39389186 aaggagctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagtcaa 39389129  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 39421754 - 39421677
Alignment:
Q  65 aatatattgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgtt 142  Q
    ||||| ||||||| ||||| ||||| |||||||||||||||||||||  |||||||||| | |||| || ||||||||    
T  39421754 aatattttgatgaggaaaatgaatctggtaaatgttcttattcatctaatttattgaaagagtttcatttcaactgtt 39421677  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 39473333 - 39473285
Alignment:
Q  63 aaaatatattgatgaagaaaaagaatcgggtaaatgttcttattcatct 111  Q
    ||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  39473333 aaaatattttgatgaggaaatagaatcgggtaaatgttcttattcatct 39473285  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 39468447 - 39468488
Alignment:
Q  85 gaatcgggtaaatgttcttattcatcttgtttattgaaaaaa 126  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  39468447 gaatctggtaaatgttcttattcatctagtttattgaaaaaa 39468488  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 39137997 - 39138045
Alignment:
Q  71 ttgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttatt 119  Q
    ||||||| |||||||||||||||||  |||||||||||||| |||||||    
T  39137997 ttgatgaggaaaaagaatcgggtaagagttcttattcatctagtttatt 39138045  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 39381435 - 39381368
Alignment:
Q  63 aaaatatattgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttc 130  Q
    |||||||||||| || ||  ||||||| ||||||||||||||||||| | ||||| ||||| ||||||    
T  39381435 aaaatatattgacgaggagcaagaatctggtaaatgttcttattcatatagtttactgaaagaatttc 39381368  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 39370243 - 39370285
Alignment:
Q  79 gaaaaagaatcgggtaaatgttcttattcatcttgtttattga 121  Q
    |||||||| | |||||||||||||||||||||| |||||||||    
T  39370243 gaaaaagatttgggtaaatgttcttattcatctagtttattga 39370285  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 39152694 - 39152755
Alignment:
Q  63 aaaatatattgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaa 124  Q
    ||||||| ||||||| |||| |||||| |||||||||| |||||  ||| ||||||||||||    
T  39152694 aaaatattttgatgaggaaatagaatcaggtaaatgtttttatttgtctagtttattgaaaa 39152755  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 39459379 - 39459432
Alignment:
Q  71 ttgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaa 124  Q
    ||||||| |||| |||||||||||| ||||||||||||| | | ||||||||||    
T  39459379 ttgatgaggaaacagaatcgggtaagtgttcttattcatttagcttattgaaaa 39459432  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 39397775 - 39397731
Alignment:
Q  61 aaaaaatatattgatgaagaaaaagaatcgggtaaatgttcttat 105  Q
    |||||||||||  |||| |||||||||||||||||| ||||||||    
T  39397775 aaaaaatatatcaatgaggaaaaagaatcgggtaaaggttcttat 39397731  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 16113416 - 16113495
Alignment:
Q  61 aaaaaatatattgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactg 140  Q
    |||||| ||||||| || ||||||||||||||||| |||||| |||||||| |||||||||||||| ||| || ||||||    
T  16113416 aaaaaacatattgacgaggaaaaagaatcgggtaagtgttctcattcatctagtttattgaaaaaaattcatttcaactg 16113495  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 33561107 - 33561196
Alignment:
Q  58 aggaaaaaatatattgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctct 147  Q
    ||||||||||  |||||| | ||||||||||| ||||||||||||| ||||||| ||||||||||| |||||  ||| || |||||||||    
T  33561107 aggaaaaaatgcattgataaggaaaaagaatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctct 33561196  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33561008 - 33561065
Alignment:
Q  1 aaggagctcaacttaaaagaaaagtggtttgaaggacaagtcaaggatcctgtgtcaa 58  Q
    |||||||||| |||||||| ||||  || ||||||||||| |||||||||| ||||||    
T  33561008 aaggagctcagcttaaaagtaaagcagtgtgaaggacaaggcaaggatcctatgtcaa 33561065  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 19807947 - 19807994
Alignment:
Q  71 ttgatgaagaaaaagaatcgggtaaatgttcttattcatcttgtttat 118  Q
    ||||||| ||||||| |||||||||| |||||||||||||| ||||||    
T  19807947 ttgatgaggaaaaagcatcgggtaaaagttcttattcatctagtttat 19807994  T

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