View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16218_low_29 (Length: 234)

Name: NF16218_low_29
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16218_low_29
NF16218_low_29
[»] chr7 (17 HSPs)
chr7 (15-218)||(27830933-27831136)
chr7 (15-186)||(8659302-8659473)
chr7 (15-165)||(1301420-1301570)
chr7 (16-201)||(8654374-8654559)
chr7 (15-201)||(10494432-10494618)
chr7 (16-123)||(3147266-3147373)
chr7 (15-201)||(8667343-8667529)
chr7 (31-158)||(8545600-8545727)
chr7 (19-165)||(17260201-17260347)
chr7 (15-201)||(13333514-13333700)
chr7 (15-165)||(8646837-8646987)
chr7 (15-164)||(8585764-8585913)
chr7 (15-131)||(29581899-29582015)
chr7 (15-158)||(7877791-7877934)
chr7 (15-131)||(29577730-29577846)
chr7 (56-158)||(8570278-8570380)
chr7 (15-208)||(6789429-6789622)
[»] chr8 (2 HSPs)
chr8 (15-218)||(43744723-43744926)
chr8 (15-158)||(12528471-12528614)
[»] chr2 (8 HSPs)
chr2 (15-215)||(16657575-16657775)
chr2 (15-131)||(7542220-7542336)
chr2 (15-201)||(14703332-14703518)
chr2 (15-164)||(16662050-16662199)
chr2 (16-122)||(12258640-12258746)
chr2 (15-165)||(43625372-43625522)
chr2 (15-123)||(12234691-12234799)
chr2 (15-61)||(12245464-12245510)
[»] chr5 (1 HSPs)
chr5 (15-218)||(28219825-28220028)
[»] chr1 (2 HSPs)
chr1 (15-164)||(4678616-4678765)
chr1 (15-192)||(15594967-15595144)
[»] chr4 (3 HSPs)
chr4 (22-119)||(35132454-35132551)
chr4 (16-201)||(9335950-9336135)
chr4 (25-161)||(30775216-30775352)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 27830933 - 27831136
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27830933 tcaccttggtggagaggactttgataataggatggtgaactattttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 27831032  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttatttgagggcactgact 214  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27831033 ttgaggaggctgagaacctaatgtgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttatttgagggcattgact 27831132  T
Q  215 tctt 218  Q
    ||||    
T  27831133 tctt 27831136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 8659473 - 8659302
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    ||||||||| ||||||||||||||||  || ||||||||||||||||| |||| |||||| |||||||| | ||||||||||||||| ||||||| | ||    
T  8659473 tcaccttggaggagaggactttgatagcagaatggtgaactactttgtagaggagttcaaaaagaagaataaagtggacattagtggtaacccaaaatcc 8659374  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgag 186  Q
    || |||||| |||||||    || |||| |||||| ||||||||||||||| || ||| ||| ||| |||||    
T  8659373 ttaaggaggttgagaactgcctgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgag 8659302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 1301570 - 1301420
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||||||| |||| |||||  |||||||| | ||||||||||||||| ||||  | | ||    
T  1301570 tcaccttggaggagaggactttgataatagaatggtgagctactttgtagaggagttcagaaagaagaataaagtggacattagtggtaaccagaaatcc 1301471  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttt 165  Q
    || |||||| ||||||     || |||| ||||||||||||||||||||||    
T  1301470 ttaaggaggttgagaattgcgtgtgagagggcaaaaaggacactctctttt 1301420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 8654559 - 8654374
Alignment:
Q  16 caccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcct 115  Q
    ||||| || ||||| ||||||||||| || |||||| |||||||||| |||| |||||| |||||||| | |||||| ||||| || ||||||| | |||    
T  8654559 cacctagggggagaagactttgataacagaatggtgtactactttgtagaggagttcaaaaagaagaataaagtggaaattagcggtaacccaaaatcct 8654460  T
Q  116 tgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttattt 201  Q
    | |||||| |||||||    || |||| ||||||||||| |||||||||| || ||| ||| ||| ||||| ||||||| ||||||    
T  8654459 taaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggtagatgctttattt 8654374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 10494432 - 10494618
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    ||||||||| ||||||||||| ||||| || |||||||| || ||||| |||| |||||| |||||||| |  |||||||| |||||||| |||| | ||    
T  10494432 tcaccttgggggagaggacttcgataacagaatggtgaattattttgttgaggagttcaaaaagaagaataacgtggacatcagtgggaatccaaaatcc 10494531  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttattt 201  Q
    || |||||| |||||||    || |||| ||||||||||| ||||||||||||| ||| ||| ||  ||||| | ||||| ||||||    
T  10494532 ttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttattt 10494618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 3147373 - 3147266
Alignment:
Q  16 caccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcct 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    || ||| ||||||||||| |  || |||||||||| |||| |||||||||    
T  3147373 caccttgggggagaggactttgataataggatggtgaactactttgcacgggagtttaagaagaagaacaaggtagacattagtgagaactcaagagcct 3147274  T
Q  116 tgaggagg 123  Q
    | ||||||    
T  3147273 taaggagg 3147266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 8667529 - 8667343
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    ||||||||| || |||||||| ||||| || ||||||||||| ||||| |||| ||| || |||||||| | ||||||||| |||  |||||||| | ||    
T  8667529 tcaccttgggggcgaggacttcgataacagaatggtgaactattttgttgaggagttaaaaaagaagaataaagtggacatcagtcagaacccaaaatcc 8667430  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttattt 201  Q
    || |||||| |||||||    || |||| ||||||||||| |||||||||| || |||  || ||| ||||| ||||||| ||||||    
T  8667429 ttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttgcttttgttaccactgttgaggtagatgctttattt 8667343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 8545727 - 8545600
Alignment:
Q  31 gactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagccttgaggaggctgagaa 130  Q
    ||||||||||| || |||||||| ||||||||| ||| |||||||| |||||| |  | ||| |||||| ||||||||  ||||||||||||| ||||||    
T  8545727 gactttgataacagaatggtgaattactttgtgaaggagttcaagaggaagaacaatgaggatattagtcggaacccagaagccttgaggaggttgagaa 8545628  T
Q  131 cccaatgcgagaaggcaaaaaggacact 158  Q
    |    || ||||||||||||||||||||    
T  8545627 ctgcctgtgagaaggcaaaaaggacact 8545600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 17260347 - 17260201
Alignment:
Q  19 cttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaa-gaaaagagtggacattagtgggaacccaagagccttg 117  Q
    ||||| || ||||||||||||||||| |||||| |||| ||||| |||| | |||| ||||| ||||| | ||||||||| ||||||||||| ||||||     
T  17260347 cttgggggtgaggactttgataatagaatggtgtactattttgtagaggagatcaa-aagaacgaaaaaattggacattattgggaacccaaaagcctta 17260249  T
Q  118 aggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttt 165  Q
    |||||| |||||||   ||| || || |||||||||||||| ||||||    
T  17260248 aggaggttgagaactgcatgtgaaaaagcaaaaaggacactttctttt 17260201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 13333514 - 13333700
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    ||||||||| ||||| ||||| ||||| || ||||||||||| ||||| |||| |||||| |||||||| |  || || || ||||||||||||| | ||    
T  13333514 tcaccttgggggagaagacttcgataacagaatggtgaactattttgttgaggagttcaaaaagaagaataacgtcgatatcagtgggaacccaaaatcc 13333613  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttattt 201  Q
    || |||||| |||||||    || |||| || |||||||| |||||| |||||| ||| ||| ||| ||||  ||||||| ||||||    
T  13333614 ttaaggaggttgagaactgcctgtgagagggaaaaaaggatactctccttttcttttgtcaccactgttgaagtagatgctttattt 13333700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 8646987 - 8646837
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||| || |||||||||||||||| ||| |||||| || ||||||   | |  || || |||||||| |  |||||||||| ||| ||| ||||||||    
T  8646987 tcacctcggaggagaggactttgatagtagaatggtggaccactttgcacaagaatttaacaagaagaacaaggtggacattactggaaactcaagagcc 8646888  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttt 165  Q
    || |||||| |||||||   ||||||||  |||||||||||||| ||||||    
T  8646887 ttaaggaggttgagaacggcatgcgagagagcaaaaaggacactatctttt 8646837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 8585764 - 8585913
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    ||||||||| |||| |||||||||||| || ||| ||||||||||||| ||||  || ||||  ||||| |  ||||| |||| |  ||||||||||||     
T  8585764 tcaccttgggggaggggactttgataacagaatgttgaactactttgttgaggaatttaagagaaagaacaatgtggatattactaagaacccaagagct 8585863  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctcttt 164  Q
    |||||| || | |||||   ||| || ||||||||||||||||| |||||    
T  8585864 ttgaggcggttaagaacggcatgtgaaaaggcaaaaaggacactttcttt 8585913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 29581899 - 29582015
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||| || |||||||||||||||||  | |||||||| ||||||| | | | ||| |||| |||||| |   ||||||||||||||||||||| |||     
T  29581899 tcacctaggaggagaggactttgataaccgaatggtgaattactttgcgaatgagttgaagaggaagaacaatttggacattagtgggaacccaaaagct 29581998  T
Q  115 ttgaggaggctgagaac 131  Q
    || |||| |||||||||    
T  29581999 ttaaggaagctgagaac 29582015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 7877791 - 7877934
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||| |||||||||||||||||||| || ||| ||||| | || |||  || ||| |||| |||||| | |||||||||| |||| ||||| || |||    
T  7877791 tcacctaggtggagaggactttgataacagaatgttgaaccatttagtgatggagtttaagaggaagaataaagtggacattggtggaaacccgagggcc 7877890  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacact 158  Q
     | |||||| |||||||   ||| |||| ||| |||||||||||    
T  7877891 cttaggaggttgagaactgcatgtgagagggctaaaaggacact 7877934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 29577730 - 29577846
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||| || ||||||||||| |||||||  ||||||| | |||||||| | | ||| |||| |||||| |  ||||||||||||  |||||||| |||     
T  29577730 tcacctaggaggagaggacttcgataataaaatggtgagccactttgtgaatgagttgaagaggaagaacaatgtggacattagtttgaacccaaaagct 29577829  T
Q  115 ttgaggaggctgagaac 131  Q
    || |||| |||||||||    
T  29577830 ttaaggaagctgagaac 29577846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 8570380 - 8570278
Alignment:
Q  56 actttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagccttgaggaggctgagaacccaatgcgagaaggcaaaaaggac 155  Q
    |||||||| ||  ||||||||||||||| |  | ||| |||||| ||||||||| ||||||||||||| | |||||    || |||| ||||||||||||    
T  8570380 actttgtgaagaagttcaagaagaagaacaacgaggatattagtaggaacccaaaagccttgaggaggttaagaacagcttgtgagagggcaaaaaggac 8570281  T
Q  156 act 158  Q
    |||    
T  8570280 act 8570278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 6789622 - 6789429
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||| || |||||||||||||||||  |  |||| ||||||||||  |||| ||| |||| |||||| | |||||| |||| ||| ||| |||| |||    
T  6789622 tcacctcggaggagaggactttgataaccgattggtaaactactttgcagaggagtttaagaggaagaacaaagtggatattactggaaactcaagggcc 6789523  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttatttgagggca 208  Q
    || || ||| |||||||    || || | ||| ||||||  ||||||||||  ||| | ||||||||||||| ||||  | |||||| ||||||    
T  6789522 ttaagaaggttgagaactgcgtgtgaaagggccaaaagggtactctcttttgttgtcgtcactactattgaggtagactctttatttcagggca 6789429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 43744926 - 43744723
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||| || |||||||| |||||||||||||||||||||||||| |  |||| ||| ||||||||||| |  |||||||||| ||| |||||||||||     
T  43744926 tcacctcggaggagaggattttgataataggatggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaacccaagagca 43744827  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttatttgagggcactgact 214  Q
    || |||||| |||||||   |||||| |  |||||||||||| | |||||| |||||| ||| ||||||||| ||||| | ||||||||||||| ||| |    
T  43744826 ttaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagattctttatttgagggcattgatt 43744727  T
Q  215 tctt 218  Q
    ||||    
T  43744726 tctt 43744723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 12528614 - 12528471
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    ||||||||| |||||||||||||||||| | ||||||||  |||||||| | | ||| |||| |||||| | ||| ||||||| ||||||| ||| ||||    
T  12528614 tcaccttggaggagaggactttgataatcgaatggtgaatcactttgtgaaagagtttaagaggaagaacaaagttgacattattgggaactcaaaagcc 12528515  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacact 158  Q
     | |||||  |||||||  | ||||||||||| |||||||||||    
T  12528514 ctaaggagattgagaactaactgcgagaaggcgaaaaggacact 12528471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 16657575 - 16657775
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    ||||||||| ||||||||||||||||| || | ||||||||||||||| |||| |||  | |||||||| |  |||||||| ||||||||| ||||||||    
T  16657575 tcaccttgggggagaggactttgataacagaacggtgaactactttgtagaggagtttcaaaagaagaataaggtggacataagtgggaactcaagagcc 16657674  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttatttgagggcactgact 214  Q
    ||||||||| |||||||   ||| |||| |||||| ||||||||||||||| || ||| ||| ||| ||||| ||||| | |||||| |||| | |||||    
T  16657675 ttgaggaggttgagaactgcatgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtagattctttatttcagggaattgact 16657774  T
Q  215 t 215  Q
    |    
T  16657775 t 16657775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 7542336 - 7542220
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||||||  | | ||||||||  ||||| | |||||||||||||||||| |||| ||||    
T  7542336 tcaccttggtggagaagactttgataatagaatggcgaactactttgtacaagagttcaagagaaagaacaaagtggacattagtgggaatccaaaagcc 7542237  T
Q  115 ttgaggaggctgagaac 131  Q
    ||||||||| |||||||    
T  7542236 ttgaggaggttgagaac 7542220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 14703518 - 14703332
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||| || ||||||||||| ||||| || |||||||||||||||||  | | ||||||||  || || ||| ||||||||||||| || |||| ||||    
T  14703518 tcacctcgggggagaggacttcgataacagaatggtgaactactttgttcaagagttcaagagaaaaaacagattggacattagtggaaatccaaaagcc 14703419  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttattt 201  Q
    || |||||  ||||||||   ||||||| ||||||||| ||||| |||||    |||| | | ||||||||| ||||||| ||||||    
T  14703418 ttaaggagcttgagaaccgcttgcgagagggcaaaaagaacactttctttccaagttgtcgccactattgaggtagatgctttattt 14703332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 16662050 - 16662199
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||| || ||||||||||||||||| || ||| |||||||||||||| | |  || || | |||||| | |||||| || | | |||| |||||||||    
T  16662050 tcacctcgggggagaggactttgataacagaatgttgaactactttgtgaaagaatttaataggaagaacaaagtggatatcactaggaatccaagagcc 16662149  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctcttt 164  Q
    ||||||||| |||||||    || || ||||| |||||||||||||||||    
T  16662150 ttgaggaggttgagaacttcttgtgaaaaggcgaaaaggacactctcttt 16662199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 12258640 - 12258746
Alignment:
Q  16 caccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcct 115  Q
    |||||||| |||||||||||||||||||| |||||||  |||||||| || | ||||||||  ||||| | ||| || || ||||| || |||||||| |    
T  12258640 caccttggaggagaggactttgataatagaatggtgagttactttgtagaagagttcaagagaaagaacaaagtagatataagtggaaatccaagagctt 12258739  T
Q  116 tgaggag 122  Q
    |||||||    
T  12258740 tgaggag 12258746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 43625522 - 43625372
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||||||  || |  ||  |||||||||| |  ||||| |||| ||| ||| ||||||||    
T  43625522 tcaccttggaggagaggactttgatgatagaatggtgaactactttgcagaagaatttgagaagaagaacaatgtggatattattggaaactcaagagcc 43625423  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttt 165  Q
     | || ||| |||||||   ||||||||  | |||||||||||| ||||||    
T  43625422 ataagaaggttgagaacggcatgcgagagaggaaaaaggacactgtctttt 43625372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 12234799 - 12234691
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||| || ||||||||||||||||| || ||||| |||||| |||   | | |||||| |  ||||||| ||||||||| ||||| || |||| ||||    
T  12234799 tcacctcgggggagaggactttgataacagaatggtaaactaccttgctcaagagttcaatagaaagaaaaaagtggacatgagtggaaatccaaaagcc 12234700  T
Q  115 ttgaggagg 123  Q
    |||||||||    
T  12234699 ttgaggagg 12234691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 12245464 - 12245510
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttg 61  Q
    ||||||||| |||||||| ||||||||||| ||||| ||||||||||    
T  12245464 tcaccttggaggagaggattttgataatagaatggtaaactactttg 12245510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 28220028 - 28219825
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||| || |||||||||||||||| |||||||||||||||||| |  |||| ||| ||||||||||| |  |||||||||| ||| ||| ||||||||    
T  28220028 tcacctcgggggagaggactttgatagtaggatggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaactcaagagcc 28219929  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttatttgagggcactgact 214  Q
    || |||||| |||||||    ||| |||  |||||||||||||| |||||| |||||| | | || |||||| ||||| | |||||||| |||| ||| |    
T  28219928 ttaaggaggttgagaacagcgtgcaagagagcaaaaaggacactatcttttgctgttgtcgccaccattgaggtagattctttatttgaaggcattgatt 28219829  T
Q  215 tctt 218  Q
    ||||    
T  28219828 tctt 28219825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 4678616 - 4678765
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    |||||| |||||||||||||||||||| || ||||||||||||||||| |||| |||||| |||||||| |  ||||||||||||  |||| ||| | ||    
T  4678616 tcacctaggtggagaggactttgataacagaatggtgaactactttgtagaggagttcaaaaagaagaataatgtggacattagtaagaacgcaaaaccc 4678715  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctcttt 164  Q
    || |||||| |||||||    ||||||| |||||| ||||||||||||||    
T  4678716 ttaaggaggttgagaactgcctgcgagagggcaaagaggacactctcttt 4678765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 15595144 - 15594967
Alignment:
Q  15 tcaccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcc 114  Q
    ||||||||| ||||||||||||||||| || ||||| |||||||||| | |||  ||||||| |||||| | |||||| |||| |||||||||||| |||    
T  15595144 tcaccttggaggagaggactttgataacagaatggtcaactactttgcgcaggaattcaagacgaagaacaaagtggatattactgggaacccaagggcc 15595045  T
Q  115 ttgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagat 192  Q
    ||||||||  |||||||    ||||| | ||||||||||  |||||||||| ||  || |||||| |||||| |||||    
T  15595044 ttgaggagattgagaactgcgtgcgaaagggcaaaaagggtactctcttttactactgtcactaccattgaggtagat 15594967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 35132551 - 35132454
Alignment:
Q  22 ggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagccttgag 119  Q
    |||||||||||||||||||| || |||||||||||||||||  | | ||||||||  ||||| | ||| ||||||||||||||  ||| |||||||||    
T  35132551 ggtggagaggactttgataacagaatggtgaactactttgtacaagagttcaagagaaagaacaaagtagacattagtgggaattcaaaagccttgag 35132454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 9335950 - 9336135
Alignment:
Q  16 caccttggtggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagcct 115  Q
    |||||||| || |||||||||||||| || ||||| ||||| |||||||| | ||| || |||||||| | ||||||||| |    |||||||| | |||    
T  9335950 caccttggaggcgaggactttgataacagaatggttaactattttgtggaagagttaaaaaagaagaataaagtggacatcaagcagaacccaaaatcct 9336049  T
Q  116 tgaggaggctgagaacccaatgcgagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttattt 201  Q
    | |||||| |||||||    || |||| ||||||||||| ||| |||||| || |||  || ||| ||||| ||||||| ||||||    
T  9336050 taaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttattt 9336135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 30775352 - 30775216
Alignment:
Q  25 ggagaggactttgataataggatggtgaactactttgtggaggtgttcaagaagaagaaaagagtggacattagtgggaacccaagagccttgaggaggc 124  Q
    ||||||||||||||||| || ||| |||| |||||||| ||||  || |||| |||||| |  ||||||||||  ||||| |||||||| |||||   |     
T  30775352 ggagaggactttgataacagaatgttgaattactttgtagaggaatttaagacgaagaacaacgtggacattaccgggaatccaagagctttgagacagt 30775253  T
Q  125 tgagaacccaatgcgagaaggcaaaaaggacactctc 161  Q
    |||||||   ||| || ||||||||||||||||||||    
T  30775252 tgagaactgcatgtgaaaaggcaaaaaggacactctc 30775216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University