View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_low_4 (Length: 511)
Name: NF16218_low_4
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 15 - 496
Target Start/End: Original strand, 29956390 - 29956871
Alignment:
| Q |
15 |
cagagagaatcgaatctgcgactgcaatttaaaaacattgctttccacgaatgaaaacgaagggaaaaaatgctcaccaattccttccaataacctcctt |
114 |
Q |
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| T |
29956390 |
cagagagaattgaatctgcgactgcaatttaaaaacattgctttctacgaatgaaaacgaagggaaaaaatgctcaccaattccttccaataacctcctt |
29956489 |
T |
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| Q |
115 |
agaagagtaaccagtcatactnnnnnnnccactgcttgcatacaagataggacaatcaggtttagttgcatctgagacaacaaatgtttgctgaagtgta |
214 |
Q |
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| T |
29956490 |
agaagagtaaccagtcatactaaaaaaaccactgcttgcatacaagataggacaatcaggtttagttgcatctgagacaacaaatgtttgttgaagtgta |
29956589 |
T |
|
| Q |
215 |
gacaacgcgtccttcaattcttgtgaaactcttggaaacaaccccgacaatttagcctccgaaccataattcgattcccctgaagtccttgtcgaatcag |
314 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29956590 |
gacaacgcgtccttcaattcttgcgaaactcttggaaacagccccgacaatttagcctccgaaccataattcgattcccctgaagtccttgtcgaatcag |
29956689 |
T |
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| Q |
315 |
caaacctatctgacatgcctttgctcttatcaccatccaatgaagaagaacttgtctcaactgctgctaccaaattgcctgagtttaccactagtcccca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29956690 |
caaacctatctgacatgcctttgctcttatcaccatccaatgaagaagaacttgtctcaactgctgctaccaaattgcctgagtttaccactagtcccca |
29956789 |
T |
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| Q |
415 |
ttccgcagctctctcggctatacttgcttcggttagaatttgatcattatcaccagaaggagcctttgttgatgttgagttt |
496 |
Q |
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| T |
29956790 |
ttccgcagctctctcggctatacttgcttcggttagaatttgatcattatcaccagaaggagcctttgttgatgttgagttt |
29956871 |
T |
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