View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_low_6 (Length: 495)
Name: NF16218_low_6
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 48012334 - 48011852
Alignment:
| Q |
18 |
tcctagtggttagtctatcggtattttttgagtcttgaagtctgtgcaagtttatccaacttttcatccaccaaacgaaagcaataaaagacaaaatgat |
117 |
Q |
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| T |
48012334 |
tcctagtggttagtctatcggtattttttgagtcttgaagtctgtgcaagtttatccaacttttcatccaccaaacgaaagcaataaaagacaaaatgat |
48012235 |
T |
|
| Q |
118 |
ttctttggttttttatccaacttgctcaactccaaaatcaaacactatcaacaacgttaataaaatgttccattgttttcactcttttattacatctacc |
217 |
Q |
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| T |
48012234 |
ttctttggttttttatccaacttgctcaactccaaaatcaaacactatcaacaacgttaataaaatgttccattgttttcactcttttattacatgtacc |
48012135 |
T |
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| Q |
218 |
tagcctttcttaatttcatcatacactagaaaagtagaaaactcttctccata-gctagaa-----ag-----aagaattgaaaaaaggaacatgagtgc |
306 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| || ||| |||||| || |||||||| ||||| |||||||||||| |
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| T |
48012134 |
tagtctttcttaatttcatcatacactagaaaagtagaaaactcttttctatatactagaatctataggtagaaagaattg-aaaaatgaacatgagtgc |
48012036 |
T |
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| Q |
307 |
atttgattctgaatgtagtagtggatgtgagtcaggttggactctataccttgaacattcttatgaagacactagattcataggtggaactgaagggtac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48012035 |
atttgattctgaatgtagtagtggatgtgagtcaggttggactctataccttgaacattcttatgaagacactagattcataggtggaactgaagggtac |
48011936 |
T |
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| Q |
407 |
tatggaaaccaacacaaagacaaaagagtcacaaatgagtattctgaagaaggggtggaagatttgtctatggtctctgctgct |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
48011935 |
tatggaaaccaacacaaagacaaaagagtcacaaatgagtattctgaagaaggggtggaagatttgtctatggtttctgatgct |
48011852 |
T |
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