View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_low_7 (Length: 473)
Name: NF16218_low_7
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_low_7 |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 135 - 456
Target Start/End: Complemental strand, 5665016 - 5664694
Alignment:
| Q |
135 |
tttcttgaggattacaattaatggtttttgtcaatcgtaaaagcatgtacattatacaagatataatcatcgaaacccatcacgattaaaccaggaataa |
234 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5665016 |
tttcttgaggattacaattaatggtttttgtcaatcataaaagcatgtacattatacaagatataatcatcgaaacccatcacgattaaactaggaataa |
5664917 |
T |
|
| Q |
235 |
aaatttacagcaacatccacaaaacatcttcaagcacctatagacttatatgggtgcaattgtattcaagtttttaaatacaatgacaataat-ttgagg |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
5664916 |
aaatttacagcaacatccacaaaacatcttcaagcacctatagacttatatgggtgcaattgtattcaagcttttaaatacaatgacaataatattgagg |
5664817 |
T |
|
| Q |
334 |
gcttccctatatcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaatgccacataccactctacaactagctcccacact |
433 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
5664816 |
gcttccctgtatcatattctctcctcctacaataaattaattaccaatgtgtgccttcttgtccaatgccacataccactctacaacttgcttccacact |
5664717 |
T |
|
| Q |
434 |
atatattttctaacagttctatc |
456 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5664716 |
atatattttctaacagttctatc |
5664694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 5665162 - 5665054
Alignment:
| Q |
17 |
atgcataaaaaatgtttaagtgggaatggtagttttacatacatgaatgagttaaatataagatggaaattttttgatggaaaatgaaggaaacattgtc |
116 |
Q |
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| T |
5665162 |
atgcataaaaaatgtttaagtgggaatggtaattttacatacatgaatgagttaaatataagatggaaattttttgatggaaaacgaaggaaacattgtc |
5665063 |
T |
|
| Q |
117 |
aacgaatag |
125 |
Q |
| |
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||||||||| |
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| T |
5665062 |
aacgaatag |
5665054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 448
Target Start/End: Complemental strand, 5663806 - 5663632
Alignment:
| Q |
274 |
atagacttatatgggtgcaattgtattcaagtttttaaatacaatgacaataatttgagggcttccctatatcatattctctcctcctacaataaactaa |
373 |
Q |
| |
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||||| |||||||||||| |||||||| || |||||||||||| |||||| || ||||||||| |||| |||||||||||| ||||||| | ||| |
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| T |
5663806 |
atagaattatatgggtgcgattgtatttaaacatttaaatacaattacaatatattaagggcttccatatactatattctctccttctacaatgagctat |
5663707 |
T |
|
| Q |
374 |
ttaccaatgtgtgccttcttgtccaatgccacataccactctacaactagctcccacactatatattttctaaca |
448 |
Q |
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||| ||||||||| ||||||||||||||| || |||| | ||| |||||| |||||| |||||||||||||||| |
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|
| T |
5663706 |
ttatcaatgtgtgtcttcttgtccaatgctactaaccattgtaccactagcacccacaatatatattttctaaca |
5663632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 5048100 - 5048149
Alignment:
| Q |
333 |
ggcttccctatatcatattctctcctcctacaataaactaattaccaatg |
382 |
Q |
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|||||| | ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5048100 |
ggcttcaccatatcatattctctcctcctacaataaactacttaccaatg |
5048149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 400
Target Start/End: Original strand, 5046467 - 5046625
Alignment:
| Q |
256 |
aaacatcttcaagcacctata----gacttatatgggtgcaattgtattcaagtttttaa---------atacaatgacaataatttgag-ggcttccct |
341 |
Q |
| |
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|||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||| || ||||| ||||||| | || |||||| | |
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| T |
5046467 |
aaacatctacaagcacctataaatagacttatatgagtgcaattgtattcaagcctttaagccattgagatgcaatgtcaataatattagaggcttcacc |
5046566 |
T |
|
| Q |
342 |
atatcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaat |
400 |
Q |
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||||||||||||||||||||||||| | ||| ||||||||| ||| | | ||||||||| |
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| T |
5046567 |
atatcatattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat |
5046625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 5047329 - 5047396
Alignment:
| Q |
333 |
ggcttccctatatcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaat |
400 |
Q |
| |
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|||||| | ||||||||||||||||||||||||| | ||| ||||||||| ||| | | ||||||||| |
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| T |
5047329 |
ggcttcaccatatcatattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat |
5047396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 274 - 448
Target Start/End: Original strand, 24853387 - 24853562
Alignment:
| Q |
274 |
atagacttatatgggtgcaattgtattcaagtttttaa-atacaatgacaataat-ttgagggcttccctatatcatattctctcctcctacaataaact |
371 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| ||||| || ||||| ||||||| |||| |||||| |||||||||||| |||||||||||| | || |
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| T |
24853387 |
atagacttatttggatgcaattgtattcaagcctttaagatgcaatgtcaataatattgaaggcttcatcatatcatattctttcctcctacaatgagct |
24853486 |
T |
|
| Q |
372 |
aattaccaatgtgtgccttcttgtccaatgccacataccactctacaactagctcccacactatatattttctaaca |
448 |
Q |
| |
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|||||||||| |||| | ||||||||||||| || | ||||| || ||||||||| ||||||||| |||||||||| |
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| T |
24853487 |
aattaccaatatgtgtcctcttgtccaatgctactaaacactccaccactagctcctacactatat-ttttctaaca |
24853562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 402
Target Start/End: Original strand, 24856278 - 24856408
Alignment:
| Q |
274 |
atagacttatatgggtgcaattgtattcaagtttttaa-atacaatgacaataat-ttgagggcttccctatatcatattctctcctcctacaataaact |
371 |
Q |
| |
|
|||||||||| || ||||||||||||| || ||||| || ||||| ||||||| |||| | ||| | ||||||||||||||||||||||||| | || |
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|
| T |
24856278 |
atagacttattaggatgcaattgtattccagcctttaagatgcaatgtcaataatattgaaagtttcaccatatcatattctctcctcctacaatgagct |
24856377 |
T |
|
| Q |
372 |
aattaccaatgtgtgccttcttgtccaatgc |
402 |
Q |
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|||||||||| |||| | ||||||||||||| |
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| T |
24856378 |
aattaccaatatgtgtcatcttgtccaatgc |
24856408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 397
Target Start/End: Original strand, 51246641 - 51246788
Alignment:
| Q |
256 |
aaacatcttcaagcacctata----gacttatatgggtgcaattgtattcaag-tttttaaatacaatgacaataat-ttgagggcttccctatatcata |
349 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||| ||| || |||| ||||||| |||| |||||| | | |||||| |
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| T |
51246641 |
aaacatctacaagcacctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtcaataatattgaaggcttcaccaaatcata |
51246740 |
T |
|
| Q |
350 |
ttctctcctcctacaataaactaattaccaatgtgtgccttcttgtcc |
397 |
Q |
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||||||||||||||||| | |||||| | |||||||| | |||||||| |
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|
| T |
51246741 |
ttctctcctcctacaatgagctaattcctaatgtgtgtcctcttgtcc |
51246788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 417
Target Start/End: Original strand, 6299 - 6466
Alignment:
| Q |
256 |
aaacatcttcaagcacctata----gacttatatgggtgcaattgtattcaagtttttaa-atacaatgacaataat-ttgagggcttccctatatcata |
349 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||| | || ||||| ||||||| |||| |||||| | | |||||| |
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| T |
6299 |
aaacagcttcaagcacctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtcaataatattgaaggcttcacaaaatcata |
6398 |
T |
|
| Q |
350 |
ttctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaatgccacataccactctac |
417 |
Q |
| |
|
|| |||||||||| ||| | |||||| | |||||||| | ||||||||||||| || |||||||||| |
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|
| T |
6399 |
ttatctcctcctataatgagctaattcctaatgtgtgtcatcttgtccaatgctactaaccactctac |
6466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 397
Target Start/End: Complemental strand, 20978848 - 20978765
Alignment:
| Q |
315 |
caatgacaataat-ttgagggcttccctatatcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtcc |
397 |
Q |
| |
|
||||| ||||||| |||| |||||| | |||||||||||||||||||||||||| || || || |||||||| | |||||||| |
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| T |
20978848 |
caatgtcaataatattgaaggcttcaccatatcatattctctcctcctacaatatgcttatcactaatgtgtgtcctcttgtcc |
20978765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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