View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16219_high_1_N (Length: 345)
Name: NF16219_high_1_N
Description: NF16219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16219_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 331
Target Start/End: Complemental strand, 43602040 - 43601739
Alignment:
| Q |
30 |
ctggttgagttaagtggataacaattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcaga |
129 |
Q |
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| T |
43602040 |
ctggttaagttaagtggataacgattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcaga |
43601941 |
T |
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| Q |
130 |
gacaactttatcatgtgcggggctgtgttttggtgcagaaataattttcataatttgatgatatcatatcaattggagacataattctcagttccctttc |
229 |
Q |
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| T |
43601940 |
gacaactttatcatgtgcggggctgtgttttggtgcagaaataattttcataatttgaagatatcatatcaattggagacataattctcagttccctttc |
43601841 |
T |
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| Q |
230 |
agttgtactcagcctagcatatgcccagatttatatcagcatttgccaattgccatcgcaacttcgcacaaagcatcattaaaattataataaccacagg |
329 |
Q |
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| T |
43601840 |
agttgtactcagtctagcatatgcccagatttatagcagcatttgccaattgccaatgcaacttcgcacaaagcatcattaaaattataataaccacagg |
43601741 |
T |
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| Q |
330 |
tt |
331 |
Q |
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|| |
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| T |
43601740 |
tt |
43601739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 22436220 - 22436340
Alignment:
| Q |
76 |
cacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaataatt |
175 |
Q |
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||||||||||| ||||||||| ||||||||||||||| |||||| ||| | |||| ||||||||||||||||||| | ||||||||||||||||| ||| |
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| T |
22436220 |
cacgtgatgcatgtgacagaccgcaaattattgtcaattggaaccgttataagaggcaactttatcatgtgcgggagtatgttttggtgcagaaatcatt |
22436319 |
T |
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| Q |
176 |
ttcataatttgatgatatcat |
196 |
Q |
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|||||||||| | |||||||| |
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| T |
22436320 |
ttcataattttaagatatcat |
22436340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 22239084 - 22239135
Alignment:
| Q |
145 |
tgcggggctgtgttttggtgcagaaataattttcataatttgatgatatcat |
196 |
Q |
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| T |
22239084 |
tgcgggactgtgttttggtgcagaaataattttcataattttaagatatcat |
22239135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 37560602 - 37560653
Alignment:
| Q |
145 |
tgcggggctgtgttttggtgcagaaataattttcataatttgatgatatcat |
196 |
Q |
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| T |
37560602 |
tgcgggactgtgttttggtgcagaaataattttcataattttaagatatcat |
37560653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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