View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1621_high_1 (Length: 713)
Name: NF1621_high_1
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 308 - 638
Target Start/End: Original strand, 5952274 - 5952607
Alignment:
| Q |
308 |
tttgcgtcttactcaggtcgtagattatgagttgaatcatgtcaaatgtaatgttattgataaatgttcttgtaagaacattttgggtggggaagtgtca |
407 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5952274 |
tttgcgtcttactcaagtcgtagattatgagtagaatcatgtcaaatgtaatgttattgataaatgttcttgtaagaacattttgggtggggaagtgtca |
5952373 |
T |
|
| Q |
408 |
tatataataaaattagcgttgagggtcgatcagaatttatgggatattagtgtggtgtctaactta--tgtgtgattactctcaatttaatgtggatgat |
505 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| ||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
5952374 |
tatataataaaattagtgttgagggtcgataagaacttatgggatattaatgcggtgtctaacttatttgtgtgattactctgaatttaatgtggatgat |
5952473 |
T |
|
| Q |
506 |
-ttttaaactcccctcgtgaactaatagttgggcaagaggtagaaactgtgcttgcactagctcaaagtagttggatgaatgtgtcgaagttagttgatg |
604 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5952474 |
cttttaaactcccctcgtgaattaatagttgggcaagaggtagaaactgtgcttgcactagctcaaagtagttggatgaatgtgtcgaagttagttgatg |
5952573 |
T |
|
| Q |
605 |
tttaagtagcatttcatcctgtgtgtacttgcct |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
5952574 |
tttaagtagcatttcatcctgtgtgtacttgcct |
5952607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 13797740 - 13797433
Alignment:
| Q |
1 |
ttagtatgatgaaacaaatttttatcaagaatgaaacaatttgtttgtttatttcttaatatcacctaataatacataatctgtgctttataannnnnnn |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13797740 |
ttagtatgatgaaacaattttttatcaagaacgaaacaatttgtttgtttatttcttaatatcacctaataatacataatctgtgctttataattttttt |
13797641 |
T |
|
| Q |
101 |
nngtattatcatattattatcaccttagtaacaaggtgaattaccgaacaataccactttaacaggtaattcttaaattcaatcataaccgttcattact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13797640 |
ttgtattatcatattattatcaccttagtaacaagatgaattaccaaacaataccactttaacaggtaattcttaaattcaatcataaccgttcattact |
13797541 |
T |
|
| Q |
201 |
ttataatatatccaactgctaccattagatgcttaaaac-nnnnnnnnntagcattatatctctcacgggtgcatgacctattcacatcatgcaccgtag |
299 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13797540 |
ttataatatatccaactgctaccgttagatgcttaaaacaaaaaaaaattagcattacatctctcacgggtgcatgacctattcacatcatgcaccgtag |
13797441 |
T |
|
| Q |
300 |
actgagcc |
307 |
Q |
| |
|
|| ||||| |
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|
| T |
13797440 |
acggagcc |
13797433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 130 - 308
Target Start/End: Original strand, 13800507 - 13800687
Alignment:
| Q |
130 |
aacaaggtgaattaccgaacaataccactttaacaggtaattcttaaattcaatcataaccgttcattactttataatatatccaactgctaccattaga |
229 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
13800507 |
aacaaggagaattactcatcaataccactttaacaggtaactcttaaattcaatcataaccgttcattactttataatatatccaacaactagcattaga |
13800606 |
T |
|
| Q |
230 |
tgcttaaaac--nnnnnnnnntagcattatatctctcacgggtgcatgacctattcacatcatgcaccgtagactgagcct |
308 |
Q |
| |
|
|| || |||| || ||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||| |
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|
| T |
13800607 |
tgtttcaaacaaaaaaaaaactaacattacatctctcacgggtacatgacctattcacatcatgcaccttagacggagcct |
13800687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 42242895 - 42242591
Alignment:
| Q |
1 |
ttagtatgatgaaacaaatttttatcaagaatgaaacaatttgtttgtttatttcttaatatcacctaataatacataatctgtgctttataannnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
42242895 |
ttagtatgatgaaacaaatttttatcaagaacgaaacaatttgtttgtttatttcttaatatcacctaata---cataatctgtgctttataattttttt |
42242799 |
T |
|
| Q |
101 |
nngtattatcatattattatcaccttagtaacaaggtgaattaccgaacaataccactttaacaggtaattcttaaattcaatcataaccgttcattact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
42242798 |
ttgtattatcatattattatcaccttagtaacaaggtgaattaccgaacaataccactttaataggtaattcttaaattcaatcataaccgttcattact |
42242699 |
T |
|
| Q |
201 |
ttataatatatccaactgctaccattagatgcttaaaacnnnnnnnnntagcattatatctctcacgggtgcatgacctattcacatcatgcaccgtaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42242698 |
ttataatatatccaactgctaccattagatgcttaaaacaaaaataattagcattacatctctcacgggtgcatgacctattcacatcatgcaccgtaga |
42242599 |
T |
|
| Q |
301 |
ctgagcct |
308 |
Q |
| |
|
| |||||| |
|
|
| T |
42242598 |
cggagcct |
42242591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 130 - 301
Target Start/End: Original strand, 42245601 - 42245773
Alignment:
| Q |
130 |
aacaaggtgaattaccgaacaataccactttaacaggtaattcttaaattcaatcataaccgttcattactttataatatatccaactgctaccattaga |
229 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
42245601 |
aacaaggagaattactcatcaataccactttaacaggtaactcttaaattcaatcataaccgttcattactttataatatatccaacaactagcattaga |
42245700 |
T |
|
| Q |
230 |
tgcttaaaac-nnnnnnnnntagcattatatctctcacgggtgcatgacctattcacatcatgcaccgtagac |
301 |
Q |
| |
|
|| || |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
42245701 |
tgtttcaaacaaaaaaaaactagcattacatctctcacgggtacatgacctattcacatcatgcaccgtagac |
42245773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 14155035 - 14154727
Alignment:
| Q |
1 |
ttagtatgatgaaacaaatttttatcaagaatgaaacaatttgtttgtttatttcttaatatcacctaataatacataatctgtgctttataannnnnnn |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14155035 |
ttagtatgatgaaacaattttttatcaagaacgaaacaatttgtttgtttatttcttaatatcacctaataatacataatctgtgctttataattttttt |
14154936 |
T |
|
| Q |
101 |
nn-gtattatcatattattatcaccttagtaacaaggtgaattaccgaacaataccactttaacaggtaattcttaaattcaatcataaccgttcattac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14154935 |
tttgtattatcatattattatcaccttagtaacaaggtgaattaccgaacaataccactttaacaggtaattcttaaattcaatcataaccgttcattac |
14154836 |
T |
|
| Q |
200 |
tttataatatatccaactgctaccattagatgcttaaaac-nnnnnnnnntagcattatatctctcacgggtgcatgacctattcacatcatgcaccgta |
298 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14154835 |
tttataatatatccaactgctaccattaaatgcttaaaacaaaaaaaaattagcattacatctctcacgggtgcatgacctattcacatcatgcaccgta |
14154736 |
T |
|
| Q |
299 |
gactgagcc |
307 |
Q |
| |
|
||| ||||| |
|
|
| T |
14154735 |
gacggagcc |
14154727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 130 - 307
Target Start/End: Original strand, 14163204 - 14163383
Alignment:
| Q |
130 |
aacaaggtgaattaccgaacaataccactttaacaggtaattcttaaattcaatcataaccgttcattactttataatatatccaactgctaccattaga |
229 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
14163204 |
aacaaggagaattactcatcaataccactttaacaggtaactcttaaattcaatcataaccgttcattactttataatatatccaacaactagcattaga |
14163303 |
T |
|
| Q |
230 |
tgcttaaaac--nnnnnnnnntagcattatatctctcacgggtgcatgacctattcacatcatgcaccgtagactgagcc |
307 |
Q |
| |
|
|| || |||| || ||||| ||||||||||| | |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
14163304 |
tgtttcaaacaaaaaaaaaactaacattacatctctcacggatccatgacctattcacatcatgcaccttagacggagcc |
14163383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 22789235 - 22789153
Alignment:
| Q |
147 |
aacaataccactttaacaggtaattcttaaattcaatcataaccgttcattactttataatatatccaactgctaccattagat |
230 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
22789235 |
aacaataccactttaacatgtaat-cttaattttaatcataaccgttcattactttataatatatccaaccgctagcattagat |
22789153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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