View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_high_14 (Length: 402)
Name: NF1621_high_14
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 2 - 360
Target Start/End: Complemental strand, 16617730 - 16617374
Alignment:
| Q |
2 |
acattattacaagccattacaataatcactattaatattctccctcgaacctcgtcacttagatcaataggattctcctctacggttcatggggctccta |
101 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | || |
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| T |
16617730 |
acattattacaagccattacaataatcactattaatcttctccctcgaccctcgtcacttaggtcaataggattctcctctacggttcatggggcactta |
16617631 |
T |
|
| Q |
102 |
attttgattgtgtagaccaaaataacatgtccttccactacttctcagcttattaaaattgtagactgacaccttcacattgcnnnnnnncttcagatcc |
201 |
Q |
| |
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|||||| |||| |||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||||| |||||| |||||||||| |
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| T |
16617630 |
attttggttgt--agaccaaaataacacatccttccactacttctaagcttattaaaattgtagaccgtcaccttcgcattgctttttttcttcagatcc |
16617533 |
T |
|
| Q |
202 |
ttcgcatttgatgccgtgccacatcatgatcgtttttgctttctttttcatttgagtatcaccgtgctggacctcaagctcctttttcaattaagcacca |
301 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
16617532 |
ttcgcatttgataccgtgccatatcatgatcgtttttgctttctttttcatttgagtatcactgtgctggacctcaagctcctttttgaattaagcacca |
16617433 |
T |
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| Q |
302 |
tcctccttctcaaacatgaccataaacataaaacaatacaaaaaatcattcaaaattga |
360 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
16617432 |
tcctccttctcagacatgaccatagacataaaacactacaaaaaatcattcaaaattga |
16617374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 25849793 - 25849458
Alignment:
| Q |
1 |
gacattattacaagccattacaataatcactattaatattctccctcgaacctcgtcacttagatcaataggattctcctctacggttcatggggctcct |
100 |
Q |
| |
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|||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| ||||||||||| |||||| | |||| | || | ||| |
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| T |
25849793 |
gacattattacaagtcattacaataatcacttttaatcttctccctca-------tcacttaagtcaataggattgtcctctgcagttcctaggacacct |
25849701 |
T |
|
| Q |
101 |
aattttgattgtgtagaccaaaataacatgtccttccactacttctcagcttattaaaattgtagactgacaccttcacattgcnnnnnnncttcagatc |
200 |
Q |
| |
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||||||| ||||| ||||||||||||||||| || |||| ||||||||||| || |||||||| || ||||||| ||||| ||||||||| |
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| T |
25849700 |
aattttggttgtg--gaccaaaataacatgtcttttcactccttctcagcttcttgaaattgtataccagcaccttcgcattg-tttttttcttcagatc |
25849604 |
T |
|
| Q |
201 |
cttcgcatttgatgccgtgccacatcatgatcgtttttgctttctttttcatttgagtatcaccgtgctggacctcaagctcctttttcaattaagcacc |
300 |
Q |
| |
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||||||||||||| ||| |||||||||| |||||||||||||||| |||||| ||||||||| | |||| ||||||||||||||||||||| |||||| |
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| T |
25849603 |
gttcgcatttgatgtcgtaccacatcatggacgtttttgctttctttgtcatttaagtatcaccctactgggcctcaagctcctttttcaattcagcacc |
25849504 |
T |
|
| Q |
301 |
atcctccttctcaaacatgaccataaacataaaacaatacaaaaaa |
346 |
Q |
| |
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| | | ||||||| |||| ||| | |||||||||||||||||| |
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| T |
25849503 |
accattcttctcagacatatatatacaaataaaacaatacaaaaaa |
25849458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 23282928 - 23283102
Alignment:
| Q |
1 |
gacattattacaagccattacaataatcactattaatattctccctcgaacctcgtcacttagatcaataggattctcctctacggttcatggggctcct |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| ||||| |||| ||||||| ||||||||||| || || || |||| | |||| ||| |
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| T |
23282928 |
gacattattacaagtcattacaataatcacttttaatcttctc-------cctcatcacttaagtcaataggattgtcttcgacagttcctagggcacct |
23283020 |
T |
|
| Q |
101 |
aattttgattgtgtagaccaaaataacatgtccttccactacttctcagcttattaaaattgtagactgacaccttcacattgc |
184 |
Q |
| |
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|||||| ||||| ||||||||||||| ||| ||||| | ||||||||||| || |||||||| |||| | ||||| |||||| |
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| T |
23283021 |
aattttagttgtg--gaccaaaataacacgtcgttccaatccttctcagcttgttgaaattgtatactggccccttcgcattgc |
23283102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 5307672 - 5307769
Alignment:
| Q |
65 |
tcaataggattctcctctacggttcatggggctcctaattttgattgtgtagaccaaaataacatgtccttccactacttctcagcttattaaaattgta |
164 |
Q |
| |
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|||||| |||| |||||||| ||| |||||| |||||||||| ||||| || ||||||| || | ||||||| | ||||||||||| || |||||||| |
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| T |
5307672 |
tcaatatgattgtcctctacagtttctggggcacctaattttggttgtg--gatcaaaatagcaggcccttccagtccttctcagcttgttgaaattgta |
5307769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 23554428 - 23554510
Alignment:
| Q |
93 |
gggctcctaattttgattgtgtagaccaaaataacatgtccttccactacttctcagcttattaaaattgtagactgacaccttc |
177 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
23554428 |
gggcacctaattttggttgtg--gaccaaaataacttgcccttccactccttctcagcttatttaaattgtagactgacaccttc |
23554510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 35771271 - 35771176
Alignment:
| Q |
86 |
gttcatggggctcctaattttgattgtgtagaccaaaataacatgtccttccactacttctcagcttattaaaattgtagactgacaccttcacattg |
183 |
Q |
| |
|
||||||||||| |||||||||| |||| ||||||||||||| || |||||||| ||||||| ||| || |||||||| ||| ||||||||||||| |
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| T |
35771271 |
gttcatggggcacctaattttggctgtg--gaccaaaataacacgtgcttccactccttctcaacttgttgaaattgtatactagcaccttcacattg |
35771176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 12231780 - 12231843
Alignment:
| Q |
196 |
agatccttcgcatttgatgccgtgccacatcatgatcgtttttgctttctttttcatttgagta |
259 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||| | |||||||||||| |||||| ||||||| |
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| T |
12231780 |
agatccttcgaatttgatgtcgttccacatcatggtggtttttgctttcgttttcaattgagta |
12231843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 44099220 - 44099157
Alignment:
| Q |
196 |
agatccttcgcatttgatgccgtgccacatcatgatcgtttttgctttctttttcatttgagta |
259 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| | | ||||||||||||||||| ||||||| |
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|
| T |
44099220 |
agatccttcgcatttgatgacgtgccatgtcatggtggattttgctttctttttcaattgagta |
44099157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 12231683 - 12231737
Alignment:
| Q |
96 |
ctcctaattttgattgtgtagaccaaaataacatgtccttccactacttctcagctt |
152 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| | ||||||||||| ||||||||||| |
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| T |
12231683 |
ctcctaattttggttgtg--gaccaaaataataggtccttccactccttctcagctt |
12231737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35771405 - 35771450
Alignment:
| Q |
1 |
gacattattacaagccattacaataatcactattaatattctccct |
46 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||||| |||||||| |
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|
| T |
35771405 |
gacattattacaagccattacaataataatttttaatcttctccct |
35771450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 22844577 - 22844660
Alignment:
| Q |
98 |
cctaattttgattgtgtagaccaaaataacatgtccttccactacttctcagcttattaaaattgtagactgacaccttcacattg |
183 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||| ||||||||||| |||||||||| || |||||||| |||| |||||||| |||| |
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|
| T |
22844577 |
cctaattttggttgtg--gactaaaataacacgtccttccactctttctcagcttgttgaaattgtatactggcaccttcaaattg |
22844660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 27798999 - 27798963
Alignment:
| Q |
116 |
gaccaaaataacatgtccttccactacttctcagctt |
152 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
27798999 |
gaccaaaataacaggtccttccactccttctcagctt |
27798963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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