View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_high_16 (Length: 368)
Name: NF1621_high_16
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 37983258 - 37983598
Alignment:
| Q |
15 |
actacttacatgttctcaagcatatttataatcaaatccgatatgtaatttaatttctttatttgggacaaacttataagttataacctcatctctcttt |
114 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
37983258 |
actacttacatgttcctaagcat-tttataatcaaatccgatatgtaatttaatttctttatttgggacaaacttataactt-------catctctcttt |
37983349 |
T |
|
| Q |
115 |
atgctcttctactttggatatctctatatattatattaacatgattactttgtaatacataagtgatatactagactagaatctttgccttgggattaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37983350 |
atgctcttctactttggatatctctatatattatattaacatgattactttgtaatacataagtgatatactagactagaatctctgccttgggattaaa |
37983449 |
T |
|
| Q |
215 |
gcaatatgacagagatgaatggattggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggcagtaagctta |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37983450 |
gcaatatgacagagatgaatggattggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagctta |
37983549 |
T |
|
| Q |
315 |
tggcaatgttggattggttcctcatgtgcaactttggatttcttctcac |
363 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
37983550 |
tggcaatgttggattggttcctcatgtgcaacttcggatttcttttcac |
37983598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 17688015 - 17688352
Alignment:
| Q |
15 |
actacttacatgttctcaagcatatttataatcaaatccgatatgtaatttaatttctttatttgggacaaacttataagttataacctcatctctcttt |
114 |
Q |
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| T |
17688015 |
actacttacatgttcttaagcatatttataatcaaatccgatatgtaatttaatttctttatttgggacaaacttataa-------cctcatctctcttt |
17688107 |
T |
|
| Q |
115 |
atgctcttctactttggatatctctatatattatat-taacatgattactttgtaatacataagtgatatactagactagaatctttgccttgggattaa |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
17688108 |
atgctcttctactttggatatctccatatattatatataatatgattactttgtaatacataattgatatactagactagaatctctgccttgggattaa |
17688207 |
T |
|
| Q |
214 |
agcaatatgacagagatgaatggattggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggcagtaagctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17688208 |
agcaatatgacagagatgaatggattggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagctt |
17688307 |
T |
|
| Q |
314 |
atggcaatgttggattggttcctcatgtgcaactttggatttctt |
358 |
Q |
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| T |
17688308 |
atggcaatgttggattggttcctcatgtgcaacttcggatttctt |
17688352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 17687878 - 17687926
Alignment:
| Q |
24 |
atgttctcaagcatatttataatcaaatccgatatgtaatttaatttct |
72 |
Q |
| |
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||||||| ||||| ||||||||||||||| | |||||| |||||||||| |
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| T |
17687878 |
atgttcttaagcacatttataatcaaatctggtatgtagtttaatttct |
17687926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 37983121 - 37983169
Alignment:
| Q |
24 |
atgttctcaagcatatttataatcaaatccgatatgtaatttaatttct |
72 |
Q |
| |
|
||||||| ||||| ||||||||||||||| | |||||| |||||||||| |
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| T |
37983121 |
atgttcttaagcacatttataatcaaatctggtatgtagtttaatttct |
37983169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 22000838 - 22000497
Alignment:
| Q |
15 |
actacttacatgttctcaagcatatttataatcaaatccgatatgtaatttaatttctttatttgggacaaacttataagttataacctcatctctcttt |
114 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22000838 |
actacttacatgttcttaagtatatttataatcaaatccgatatgtaatttaatttctttatttgggacaaacttataa-------cctcatctctcttt |
22000746 |
T |
|
| Q |
115 |
atgctcttctactttggatatctctatatattatat-taacatgattactttgtaatacataagtgatatactagactagaatctttgccttgggattaa |
213 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
22000745 |
atgctcttctactttggatatctccatatattatatataacatgattactttg-aatacataattgatatactagactagaatctctgccttgggattaa |
22000647 |
T |
|
| Q |
214 |
agcaatatgacagagatgaatggattggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggcagtaagctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22000646 |
agcaatatgacagagatgaatggattggcttctatgcattagctaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagctt |
22000547 |
T |
|
| Q |
314 |
atggcaatgttggattggttcctcatgtgcaactttggatttcttctcac |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
22000546 |
atggcaatgttggattggttcctcatgtgcaacttcggatttcttttcac |
22000497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 224 - 358
Target Start/End: Original strand, 6723901 - 6724035
Alignment:
| Q |
224 |
cagagatgaatggattggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggcagtaagcttatggcaatgt |
323 |
Q |
| |
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||||||||||||| |||||||||||| ||| |||||||||| ||| || ||| | | | ||| | |||| |||| |||| ||||||||||||| || |
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| T |
6723901 |
cagagatgaatgggttggcttctatgaatttgttaccacaaattgtgtaaaacggcatattagcatacatttgaagatggaagtaagcttatggtgtagt |
6724000 |
T |
|
| Q |
324 |
tggattggttcctcatgtgcaactttggatttctt |
358 |
Q |
| |
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|||||||||||||||||||||||||| | |||||| |
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| T |
6724001 |
tggattggttcctcatgtgcaactttagttttctt |
6724035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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