View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1621_high_2 (Length: 677)

Name: NF1621_high_2
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1621_high_2
NF1621_high_2
[»] chr7 (20 HSPs)
chr7 (217-677)||(35693893-35694346)
chr7 (1-212)||(35693396-35693610)
chr7 (1-58)||(37115552-37115609)
chr7 (1-58)||(45359377-45359434)
chr7 (1-45)||(56384-56428)
chr7 (1-45)||(6602389-6602433)
chr7 (1-57)||(24228435-24228491)
chr7 (1-45)||(34776941-34776985)
chr7 (2-58)||(38474170-38474226)
chr7 (10-58)||(48227941-48227989)
chr7 (10-57)||(47384336-47384383)
chr7 (38-68)||(34774998-34775028)
chr7 (1-57)||(13168162-13168221)
chr7 (1-58)||(47386235-47386292)
chr7 (10-58)||(23904624-23904672)
chr7 (1-45)||(27666091-27666135)
chr7 (1-45)||(29996540-29996584)
chr7 (1-57)||(30940451-30940507)
chr7 (1-57)||(37796207-37796263)
chr7 (1-45)||(39859255-39859299)
[»] chr6 (7 HSPs)
chr6 (1-58)||(20523407-20523464)
chr6 (1-58)||(13613608-13613665)
chr6 (1-58)||(32439117-32439174)
chr6 (1-58)||(10568440-10568497)
chr6 (5-58)||(7372988-7373041)
chr6 (1-45)||(9398714-9398758)
chr6 (10-58)||(9400035-9400083)
[»] chr3 (18 HSPs)
chr3 (1-58)||(46197761-46197818)
chr3 (1-57)||(21348765-21348821)
chr3 (1-57)||(27899127-27899183)
chr3 (1-55)||(42279551-42279605)
chr3 (1-58)||(35905758-35905815)
chr3 (1-58)||(54898478-54898535)
chr3 (1-57)||(2226198-2226254)
chr3 (1-57)||(46112529-46112585)
chr3 (1-57)||(53190805-53190861)
chr3 (1-70)||(19987640-19987709)
chr3 (1-45)||(3152264-3152308)
chr3 (1-45)||(51684664-51684708)
chr3 (1-57)||(2377071-2377127)
chr3 (1-45)||(2660266-2660310)
chr3 (1-45)||(17515364-17515408)
chr3 (1-57)||(23293216-23293272)
chr3 (1-45)||(30599964-30600008)
chr3 (1-33)||(41977816-41977848)
[»] chr8 (16 HSPs)
chr8 (1-56)||(41825690-41825745)
chr8 (1-57)||(8609833-8609889)
chr8 (1-54)||(13486145-13486198)
chr8 (1-58)||(22272377-22272434)
chr8 (1-45)||(13108382-13108426)
chr8 (1-57)||(13282520-13282576)
chr8 (1-45)||(27691208-27691252)
chr8 (1-45)||(38547282-38547326)
chr8 (10-57)||(22273891-22273938)
chr8 (3-57)||(7745160-7745214)
chr8 (38-68)||(7745226-7745256)
chr8 (1-58)||(5036486-5036543)
chr8 (37-70)||(33761067-33761100)
chr8 (1-33)||(15305863-15305895)
chr8 (1-33)||(15486232-15486264)
chr8 (1-57)||(26242360-26242416)
[»] chr2 (15 HSPs)
chr2 (1-58)||(2766975-2767032)
chr2 (1-58)||(16763117-16763174)
chr2 (1-57)||(40560265-40560321)
chr2 (1-58)||(42519251-42519309)
chr2 (1-45)||(39455223-39455267)
chr2 (1-58)||(16377243-16377300)
chr2 (1-33)||(6786027-6786059)
chr2 (1-45)||(6797561-6797605)
chr2 (9-57)||(14389138-14389186)
chr2 (1-45)||(17696260-17696304)
chr2 (1-45)||(19908292-19908336)
chr2 (1-33)||(24208088-24208120)
chr2 (10-58)||(39663195-39663243)
chr2 (1-33)||(39664794-39664826)
chr2 (1-45)||(44709791-44709835)
[»] chr1 (14 HSPs)
chr1 (1-58)||(3013502-3013559)
chr1 (1-58)||(50556123-50556180)
chr1 (1-45)||(4855992-4856036)
chr1 (1-45)||(15104495-15104539)
chr1 (1-45)||(31238521-31238565)
chr1 (1-45)||(46583582-46583626)
chr1 (1-43)||(25278979-25279021)
chr1 (38-68)||(50556191-50556221)
chr1 (4-58)||(51896181-51896235)
chr1 (1-58)||(2869620-2869677)
chr1 (1-42)||(6818704-6818745)
chr1 (1-58)||(27087324-27087381)
chr1 (1-58)||(33602670-33602727)
chr1 (4-45)||(34778167-34778208)
[»] chr5 (11 HSPs)
chr5 (1-57)||(7267885-7267941)
chr5 (1-57)||(17574360-17574416)
chr5 (1-57)||(34327677-34327733)
chr5 (10-57)||(32134273-32134320)
chr5 (1-58)||(8539716-8539773)
chr5 (1-58)||(30468306-30468363)
chr5 (1-45)||(24541238-24541282)
chr5 (1-57)||(36057639-36057695)
chr5 (10-57)||(28813765-28813812)
chr5 (38-70)||(7269505-7269537)
chr5 (10-58)||(30463941-30463989)
[»] chr4 (11 HSPs)
chr4 (1-56)||(49523167-49523222)
chr4 (3-56)||(48646775-48646828)
chr4 (3-58)||(41781580-41781635)
chr4 (1-43)||(41761772-41761814)
chr4 (1-46)||(51011979-51012024)
chr4 (10-58)||(4169727-4169775)
chr4 (37-73)||(43507162-43507198)
chr4 (1-45)||(43519478-43519522)
chr4 (10-58)||(43521109-43521157)
chr4 (10-58)||(49524733-49524781)
chr4 (2-58)||(52868176-52868232)
[»] scaffold0564 (1 HSPs)
scaffold0564 (8-57)||(8304-8353)
[»] scaffold0058 (2 HSPs)
scaffold0058 (1-45)||(3348-3392)
scaffold0058 (1-45)||(4520-4564)
[»] scaffold1454 (1 HSPs)
scaffold1454 (1-33)||(1329-1361)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 217 - 677
Target Start/End: Original strand, 35693893 - 35694346
Alignment:
Q  217 tacatattaatggggcaaggtgtgtcaatctagaataagttcaaaggttcgagcatcatttgcttgttattaaattcatatgttgttcaagaagtttgca 316  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35693893 tacatattaatggggcaaggtgggtcaatctagaataagttcaaaggttcgagcatcatttgcttgttattaacttcatatgttgttcaagaagtttgca 35693992  T
Q  317 atgatccatttcttcattgctttgactctatttctttccattccctttcgattttaagcagaagaaacctcannnnnnnnngtcattttatacgcttata 416  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||         |||||||||||||||||||    
T  35693993 atgatccatttcttcattgctttgactctatttcattccattcactttcgattttaagcagaagaaacctcatttttttt-gtcattttatacgcttata 35694091  T
Q  417 gacnnnnnnnnnaatgaactattcttatttgaatccgctcatnnnnnnncaaaagtgagtttgtttgactagcttaaaattaggcattgaccgtcctccc 516  Q
    |||         |||||||||||   ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35694092 gactttttttt-aatgaactatt---atttgaatccgctcataaaaaa-caaaagtgagtttgtttgactagcttaaaattaggcattgaccgtcctccc 35694186  T
Q  517 tccctcttctataaagttgaagaatcacacccaatcgcaacaccaaagcaaaaaaggtggcgccaaaaagaaaacattcctcaatcttcatcggtgaatc 616  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35694187 tcc-tcttctataaagttgaagaatcaaacccaatcgcaacaccaaaacaaaaaagatggcgccaaaaagaaaacattcctcaatcttcatcggtgaatc 35694285  T
Q  617 ttcaaaccctaaaaacccttcaattcacctccctctttattcacaactccatttctaatct 677  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  35694286 ttcaaaccctaaaaacccttcaattcacctcccttttcattcacaactccatttctaatct 35694346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 35693396 - 35693610
Alignment:
Q  1 acgtctgtaaaattcagggactaattaga--tattctgcaaaattcaaagacgaatttgagatattagtcatcaaattttgaattgag--nnnnnnnngc 96  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||          ||    
T  35693396 acgtctgtaaaattcagggactaattagagatattccgcaaaattcaaggacgaatttgaggtattagtcatcaaattttgaattgagttttttttttgc 35693495  T
Q  97 aaagacctctataaaattacatcgaaaagatctgcacagtttcattgcattttttagacatctcgacatannnnnnnngactaaaacgtacaaaattgta 196  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||        ||||||||||| ||||||||||    
T  35693496 aaagacctctataaaattacatcgaaaagatctgcaatgtttcattgcattttttagacacctcgacata-tttttttgactaaaacgtgcaaaattgta 35693594  T
Q  197 attttgttcggagtaa 212  Q
    ||||||||||||||||    
T  35693595 attttgttcggagtaa 35693610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37115552 - 37115609
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||   ||||||||||    
T  37115552 acgtctgtaaaattcaggtactaaatagatattttgcaaaattcaggaacgaatttga 37115609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 45359434 - 45359377
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||| ||||||| ||||||||  ||||||||||| |||| ||||||    
T  45359434 acgtctgtaaaattcaaggactaaatagatatttcgcaaaattcaaggacggatttga 45359377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 56428 - 56384
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||    
T  56428 acgtctgtaaaattcagggactaatttgatatttcgcaaaattca 56384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6602433 - 6602389
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||    
T  6602433 acgtctgtaaaattcagggactaaatagatatttcgcaaaattca 6602389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 24228435 - 24228491
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    ||||||||||||||||| |||||| ||||||||  ||||||||||  ||||||||||    
T  24228435 acgtctgtaaaattcagagactaaatagatatttcgcaaaattcagggacgaatttg 24228491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34776941 - 34776985
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||    
T  34776941 acgtctgtaaaattcagggactaaatagatatttcgcaaaattca 34776985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 38474170 - 38474226
Alignment:
Q  2 cgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||  |||||||||||    
T  38474170 cgtctgtaaaattcaaggactaaatagatatttcgcaaaattcagggacgaatttga 38474226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 48227941 - 48227989
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||| || ||||||||  |||||||||||||||||||||||    
T  48227941 aaattcagggacaaaatagatatttcgcaaaattcaaagacgaatttga 48227989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 47384383 - 47384336
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||| |||||||||||||||||  ||||||||||| ||||||||||    
T  47384383 aaattcggggactaattagatatttcgcaaaattcaaggacgaatttg 47384336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 34775028 - 34774998
Alignment:
Q  38 aaaattcaaagacgaatttgagatattagtc 68  Q
    |||||||||||||||||||||||||||||||    
T  34775028 aaaattcaaagacgaatttgagatattagtc 34774998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13168221 - 13168162
Alignment:
Q  1 acgtctgtaaaattcagg---gactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    ||||||||||||||||||   |||||| ||||||||  ||||||||||| ||||||||||    
T  13168221 acgtctgtaaaattcaggagggactaaatagatatttcgcaaaattcaaggacgaatttg 13168162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 47386235 - 47386292
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||| || |||||| || |||||  ||||||||||| |||||||||||    
T  47386235 acgtctgtaaaatttagagactaaataaatatttcgcaaaattcaaggacgaatttga 47386292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 23904672 - 23904624
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    ||||||| ||||||| ||| |||| ||||||||||| ||||||||||||    
T  23904672 aaattcatggactaaatagctattttgcaaaattcagagacgaatttga 23904624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27666091 - 27666135
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||| ||||||||||||||||||||| ||||||  ||||||||||    
T  27666091 acgtttgtaaaattcagggactaatttgatatttcgcaaaattca 27666135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29996540 - 29996584
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||| ||||| ||||||  ||||||||||    
T  29996540 acgtctgtaaaattcagggattaatttgatatttcgcaaaattca 29996584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 30940451 - 30940507
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||| ||||||||||||||||||| ||||||||  | |||||| | |||||||||||    
T  30940451 acgtttgtaaaattcagggactaaatagatatttcgtaaaattaagagacgaatttg 30940507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37796207 - 37796263
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    ||||| |||||||||||||||||| ||||||||  ||||||||  | ||||||||||    
T  37796207 acgtccgtaaaattcagggactaaatagatatttcgcaaaatttgaggacgaatttg 37796263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39859255 - 39859299
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||| ||||||| ||||||||  ||||||||||    
T  39859255 acgtctgtaaaattcaaggactaaatagatatttcgcaaaattca 39859299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20523464 - 20523407
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||| |||||||||||    
T  20523464 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaatttga 20523407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 13613608 - 13613665
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||  |||||||||||    
T  13613608 acgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaatttga 13613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32439117 - 32439174
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  |||||||||||    
T  32439117 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttga 32439174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10568497 - 10568440
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||||| || |||||  || |||||||| |||||||||||    
T  10568497 acgtctgtaaaattcagggactaaataaatatttcgctaaattcaaggacgaatttga 10568440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 7372988 - 7373041
Alignment:
Q  5 ctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||| || |||||  ||||||||||  |||||||||||    
T  7372988 ctgtaaaattcagggactaaataaatatttcgcaaaattcagggacgaatttga 7373041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9398758 - 9398714
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||| ||||||||||||||||| ||||||||  ||||||||||    
T  9398758 acgtctataaaattcagggactaaatagatatttcgcaaaattca 9398714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 9400035 - 9400083
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||| |||||||||||||||||  ||||||||||| || ||||||||    
T  9400035 aaattcggggactaattagatatttcgcaaaattcaaggatgaatttga 9400083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 46197818 - 46197761
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||    
T  46197818 acgtctgtaaaattcaggaactaaatagatattttgcaaaattcagagacgaatttga 46197761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21348821 - 21348765
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  21348821 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaatttg 21348765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27899127 - 27899183
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  27899127 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaatttg 27899183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 42279605 - 42279551
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatt 55  Q
    |||||||||||||||||||||||| |||||||| ||||||||||  |||||||||    
T  42279605 acgtctgtaaaattcagggactaaatagatattttgcaaaattctgagacgaatt 42279551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35905758 - 35905815
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  |||||||||||    
T  35905758 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttga 35905815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 54898535 - 54898478
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  |||||||||||    
T  54898535 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttga 54898478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2226198 - 2226254
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  ||||||||||    
T  2226198 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttg 2226254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 46112585 - 46112529
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||||  |||||||||    
T  46112585 acgtctgtaaaattcatggactaaatagatattttgcaaaattcaataacgaatttg 46112529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 53190805 - 53190861
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  ||||||||||    
T  53190805 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttg 53190861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19987640 - 19987709
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttgagatattagtcat 70  Q
    |||| ||||||||| ||||||||||| ||||||  ||||||||||  |||||| ||||| ||||||||||    
T  19987640 acgtgtgtaaaatttagggactaatttgatatttcgcaaaattcagggacgaaattgaggtattagtcat 19987709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3152264 - 3152308
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||    
T  3152264 acgtctgtaaaattcagggactaatttgatatttcgcaaaattca 3152308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51684708 - 51684664
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||    
T  51684708 acgtctgtaaaattcaaggactaaatagatattttgcaaaattca 51684664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2377127 - 2377071
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    ||||||||||||||||| |||||| || || || |||||||||||  ||||||||||    
T  2377127 acgtctgtaaaattcagagactaaatatattttttgcaaaattcagggacgaatttg 2377071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2660310 - 2660266
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||| ||||||||| ||||||  ||||||||||    
T  2660310 acgtctgtaaaattcaaggactaatttgatatttcgcaaaattca 2660266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17515408 - 17515364
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||| ||||||||||||||||||| ||||||||  ||||||||||    
T  17515408 acgtttgtaaaattcagggactaaatagatatttcgcaaaattca 17515364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23293216 - 23293272
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||| ||||||||||| ||||||| ||||||||  ||||||||||| | ||||||||    
T  23293216 acgtttgtaaaattcatggactaaatagatatttcgcaaaattcaagggcgaatttg 23293272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30599964 - 30600008
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||| ||||||||||||||||| ||||||||  ||||||||||    
T  30599964 acgtctctaaaattcagggactaaatagatatttcgcaaaattca 30600008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41977848 - 41977816
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatatt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  41977848 acgtctgtaaaattcagggactaatttgatatt 41977816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41825690 - 41825745
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaattt 56  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||| |||||||||    
T  41825690 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaattt 41825745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8609833 - 8609889
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  ||||||||||    
T  8609833 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttg 8609889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13486145 - 13486198
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaat 54  Q
    |||||||||||||||||||||||| ||||||||  ||||||| || ||||||||    
T  13486145 acgtctgtaaaattcagggactaaatagatatttcgcaaaatccagagacgaat 13486198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22272434 - 22272377
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||| ||||||||||||||||||| ||||||||  ||||||||||  |||||||||||    
T  22272434 acgtttgtaaaattcagggactaaatagatattacgcaaaattcagggacgaatttga 22272377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13108382 - 13108426
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||    
T  13108382 acgtctgtaaaattcagggactaatttgatatttcgcaaaattca 13108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13282576 - 13282520
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||| ||||||||||||||||||| ||||||||  ||||||||||  ||||||||||    
T  13282576 acgtttgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttg 13282520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27691252 - 27691208
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||    
T  27691252 acgtctgtaaaattcagggactaatttgatatttcgcaaaattca 27691208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38547326 - 38547282
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||    
T  38547326 acgtctgtaaaattcagggactaatttgatatttcgcaaaattca 38547282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 22273891 - 22273938
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    ||||||||||||||| |||||||| ||||||||||| |||| ||||||    
T  22273891 aaattcagggactaaatagatattttgcaaaattcagagacaaatttg 22273938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 7745160 - 7745214
Alignment:
Q  3 gtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    ||||||||||| |||||||||| || |||||  |||||||||| |||||||||||    
T  7745160 gtctgtaaaatacagggactaaataaatatttcgcaaaattcagagacgaatttg 7745214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 7745226 - 7745256
Alignment:
Q  38 aaaattcaaagacgaatttgagatattagtc 68  Q
    |||||||||||||||||||||||||||||||    
T  7745226 aaaattcaaagacgaatttgagatattagtc 7745256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5036543 - 5036486
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||| ||||||| ||||||||   |||||||||  |||||||||||    
T  5036543 acgtctgtaaaattcaaggactaaatagatatttcacaaaattcagggacgaatttga 5036486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 33761100 - 33761067
Alignment:
Q  37 caaaattcaaagacgaatttgagatattagtcat 70  Q
    ||||||||||||||||||||||| ||||||||||    
T  33761100 caaaattcaaagacgaatttgaggtattagtcat 33761067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15305895 - 15305863
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatatt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  15305895 acgtctgtaaaattcagggactaatttgatatt 15305863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15486264 - 15486232
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatatt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  15486264 acgtctgtaaaattcagggactaatttgatatt 15486232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 26242360 - 26242416
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    ||||||||||||||||| |||||| ||||||||  |||||||| |  ||||||||||    
T  26242360 acgtctgtaaaattcagagactaaatagatatttcgcaaaatttagggacgaatttg 26242416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2767032 - 2766975
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||| ||||| |||||    
T  2767032 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgagtttga 2766975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 16763174 - 16763117
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  |||||||||||    
T  16763174 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttga 16763117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40560321 - 40560265
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  ||||||||||    
T  40560321 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttg 40560265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 42519251 - 42519309
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgc-aaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||||| ||| |||||||    
T  42519251 acgtctgtaaaattcagggactaaatagatattttgcaaaaattcaaggactaatttga 42519309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39455267 - 39455223
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||| ||||||| |||||||| |||||||||||    
T  39455267 acgtctgtaaaattcatggactaaatagatattttgcaaaattca 39455223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16377243 - 16377300
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||| ||||||||||| ||||||| |||||||| |||||||||||  ||| |||||||    
T  16377243 acgtatgtaaaattcaaggactaaatagatattttgcaaaattcagggacaaatttga 16377300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6786027 - 6786059
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatatt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  6786027 acgtctgtaaaattcagggactaatttgatatt 6786059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6797605 - 6797561
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||| ||||||||| ||||||||  ||||||||||    
T  6797605 acgtctgtaaaattaagggactaaatagatatttcgcaaaattca 6797561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 14389138 - 14389186
Alignment:
Q  9 aaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||||||||||||| ||||||||  ||||||||||  ||||||||||    
T  14389138 aaaattcagggactaaatagatatttcgcaaaattcagggacgaatttg 14389186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17696304 - 17696260
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||| ||||||||||||||||||| |||||||| | |||||||||    
T  17696304 acgtttgtaaaattcagggactaaatagatattttccaaaattca 17696260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19908292 - 19908336
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||| ||||||| ||||||||  ||||||||||    
T  19908292 acgtctgtaaaattcaaggactaaatagatatttcgcaaaattca 19908336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24208088 - 24208120
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatatt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  24208088 acgtctgtaaaattcagggactaatttgatatt 24208120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 39663243 - 39663195
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    ||||||||||||||| ||| |||| |||||||||||  |||||||||||    
T  39663243 aaattcagggactaaatagctattttgcaaaattcagggacgaatttga 39663195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39664794 - 39664826
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatatt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  39664794 acgtctgtaaaattcagggactaaatagatatt 39664826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44709791 - 44709835
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||| ||| ||||  ||||||||||    
T  44709791 acgtctgtaaaattcagggactaaatagttatttcgcaaaattca 44709835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3013502 - 3013559
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  |||||||||||    
T  3013502 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcatggacgaatttga 3013559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 50556123 - 50556180
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||| ||||||||| ||||||||  |||||||||| ||||||||||||    
T  50556123 acgtctgtaaaatttagggactaaatagatatttcgcaaaattcagagacgaatttga 50556180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4855992 - 4856036
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||    
T  4855992 acgtctgtaaaattcagggactaatttgatatttcgcaaaattca 4856036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15104539 - 15104495
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||    
T  15104539 acgtctgtaaaattcagggactaaatagatatttcgcaaaattca 15104495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31238521 - 31238565
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||    
T  31238521 acgtctgtaaaattcagggactaaatagatatttcgcaaaattca 31238565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46583582 - 46583626
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||    
T  46583582 acgtctgtaaaattcagggactaatttgatatttcgcaaaattca 46583626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25278979 - 25279021
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaatt 43  Q
    |||||||||||||||||||||||| ||||||||  ||||||||    
T  25278979 acgtctgtaaaattcagggactaaatagatatttcgcaaaatt 25279021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 50556191 - 50556221
Alignment:
Q  38 aaaattcaaagacgaatttgagatattagtc 68  Q
    |||||||||||||||||||||||||||||||    
T  50556191 aaaattcaaagacgaatttgagatattagtc 50556221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 51896181 - 51896235
Alignment:
Q  4 tctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    ||||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||    
T  51896181 tctgtaaaattcagggactaaatagatatttcgcaaaattcagggacaaatttga 51896235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2869677 - 2869620
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||| || |||||| ||||||||  ||||||||||  |||||||||||    
T  2869677 acgtctgtaaaatttagagactaaatagatatttcgcaaaattcagggacgaatttga 2869620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6818704 - 6818745
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaat 42  Q
    |||||||||||||||||||||||| |||||||| ||| ||||    
T  6818704 acgtctgtaaaattcagggactaaatagatattttgctaaat 6818745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27087381 - 27087324
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||| ||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||    
T  27087381 acgtttgtaaaattcagggactaaatagatatttcgcaaaattcagggacaaatttga 27087324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33602670 - 33602727
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||||||| ||||||   |||||||||  |||||| ||||    
T  33602670 acgtctgtaaaattcagggactaatttgatatttcacaaaattcagggacgaaattga 33602727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 34778167 - 34778208
Alignment:
Q  4 tctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    ||||||||||||||||||||||| ||||||  ||||||||||    
T  34778167 tctgtaaaattcagggactaatttgatatttcgcaaaattca 34778208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7267941 - 7267885
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  ||||||||||    
T  7267941 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcagtgacgaatttg 7267885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17574416 - 17574360
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  ||||||||||    
T  17574416 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttg 17574360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34327733 - 34327677
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  ||||||||||    
T  34327733 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcagcgacgaatttg 34327677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 32134320 - 32134273
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||    
T  32134320 aaattcagggactaaatagatattttacaaaattcaaagacgaatttg 32134273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8539773 - 8539716
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||| ||||||||||||||||||| ||||||||  |||||||||||  ||||||||||    
T  8539773 acgtttgtaaaattcagggactaaatagatatttcgcaaaattcaagaacgaatttga 8539716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30468306 - 30468363
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||| ||||||| ||||||||  |||||||| | ||||||||||||    
T  30468306 acgtctgtaaaattcaaggactaaatagatatttcgcaaaattgagagacgaatttga 30468363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24541238 - 24541282
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||    
T  24541238 acgtctgtaaaattcagggactaatttgatatttcgcaaaattca 24541282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36057639 - 36057695
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    ||||||||||||||||||| |||| ||||||||  ||||||||||  ||||||||||    
T  36057639 acgtctgtaaaattcagggtctaaatagatatttcgcaaaattcagggacgaatttg 36057695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 28813765 - 28813812
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    ||||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  28813765 aaattcagggactaaatagatatttcgcaaaattcaaggacgaatttg 28813812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 7269505 - 7269537
Alignment:
Q  38 aaaattcaaagacgaatttgagatattagtcat 70  Q
    |||||||||||||||||||||| ||||||||||    
T  7269505 aaaattcaaagacgaatttgaggtattagtcat 7269537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 30463989 - 30463941
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    ||||||||||||||| ||||||||  ||||||||||  |||||||||||    
T  30463989 aaattcagggactaaatagatatttcgcaaaattcagggacgaatttga 30463941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 49523222 - 49523167
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaattt 56  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||  |||||||||    
T  49523222 acgtctgtaaaattcagggactaaatagatatttcgcaaaattcatggacgaattt 49523167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 48646775 - 48646828
Alignment:
Q  3 gtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaattt 56  Q
    |||||||||||||||||||||| ||||||||  || |||||||| |||||||||    
T  48646775 gtctgtaaaattcagggactaaatagatatttcgctaaattcaaggacgaattt 48646828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 41781635 - 41781580
Alignment:
Q  3 gtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    |||||||||||||||||||||| || ||||| |||||||||||  ||| |||||||    
T  41781635 gtctgtaaaattcagggactaaataaatattttgcaaaattcagggacaaatttga 41781580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41761772 - 41761814
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaatt 43  Q
    |||||||||||||||||||||||| ||||||||  ||||||||    
T  41761772 acgtctgtaaaattcagggactaaatagatatttcgcaaaatt 41761814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 51012024 - 51011979
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattcaa 46  Q
    ||||||||||||||||| |||||| ||||||||  |||||||||||    
T  51012024 acgtctgtaaaattcagagactaaatagatatttcgcaaaattcaa 51011979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 4169775 - 4169727
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    ||||||||||||||||| ||||||  |||||||||| ||||||| ||||    
T  4169775 aaattcagggactaatttgatatttcgcaaaattcagagacgaaattga 4169727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 43507198 - 43507162
Alignment:
Q  37 caaaattcaaagacgaatttgagatattagtcatcaa 73  Q
    |||||||||| |||||||||||| |||||||||||||    
T  43507198 caaaattcaaggacgaatttgaggtattagtcatcaa 43507162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43519522 - 43519478
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||| ||||||||||||||||||||| ||||||  ||||||||||    
T  43519522 acgtttgtaaaattcagggactaatttgatatttcgcaaaattca 43519478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 43521109 - 43521157
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    ||||||||||||||||| ||||||  |||||||||||| ||||| ||||    
T  43521109 aaattcagggactaatttgatatttcgcaaaattcaaaaacgaaattga 43521157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 49524733 - 49524781
Alignment:
Q  10 aaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    ||||||||||||||| ||| |||| |||||||||||  |||||||||||    
T  49524733 aaattcagggactaaatagctattttgcaaaattcagggacgaatttga 49524781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 52868176 - 52868232
Alignment:
Q  2 cgtctgtaaaattcagggactaattagatattctgcaaaattcaaagacgaatttga 58  Q
    ||||||| |||||||| |||||| ||||||||  |||||||| | ||||||||||||    
T  52868176 cgtctgttaaattcagagactaaatagatatttcgcaaaatttatagacgaatttga 52868232  T

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Target: scaffold0564 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 8353 - 8304
Alignment:
Q  8 taaaattcagggactaattagatattctgcaaaattcaaagacgaatttg 57  Q
    ||||||||||||||||| |||||||| ||||||||||||  |||||||||    
T  8353 taaaattcagggactaaatagatattttgcaaaattcaagaacgaatttg 8304  T

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Target: scaffold0058 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3392 - 3348
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||    
T  3392 acgtctgtaaaattcagggactaatttgatatttcgcaaaattca 3348  T

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Target: scaffold0058; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4564 - 4520
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatattctgcaaaattca 45  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||    
T  4564 acgtctgtaaaattcagggactaatttgatatttcgcaaaattca 4520  T

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Target: scaffold1454 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1361 - 1329
Alignment:
Q  1 acgtctgtaaaattcagggactaattagatatt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  1361 acgtctgtaaaattcagggactaaatagatatt 1329  T

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