View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_high_21 (Length: 311)
Name: NF1621_high_21
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 43 - 296
Target Start/End: Original strand, 1504027 - 1504279
Alignment:
| Q |
43 |
tagcatcacggttattaattttaataatcttaaggnnnnnnnnttcaacaactttcgtgctttcacactatgcatctgcagagacacgtcgcgtttgcag |
142 |
Q |
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| T |
1504027 |
tagcatcacggttattaattttaataatcttaaggaaaaaaa-ttcaacaactttcgtgctttcacactatgcatctacagaaacacgtcgcgtttgcag |
1504125 |
T |
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| Q |
143 |
aatctatatactctacttttctctgacagcaagtttgatgtgttctcggttaataatttagttaaaggtttggtaaaccatttagctaccttccaatcct |
242 |
Q |
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| T |
1504126 |
aatctatatactctacttttctctaacaacaagtttgatgtgttcttggttaataatttagttaaaggtttggtaaaccatttagctaccttccaatcat |
1504225 |
T |
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| Q |
243 |
tcttcggattatatgatcttaaatgttatagggcgttgcaggatgtgttgacgt |
296 |
Q |
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| T |
1504226 |
tcttcggattatacgatcttaaatgttatagggcgttgcaggatgtgttgacgt |
1504279 |
T |
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