View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1621_high_27 (Length: 257)

Name: NF1621_high_27
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1621_high_27
NF1621_high_27
[»] chr7 (4 HSPs)
chr7 (114-239)||(1288754-1288879)
chr7 (32-107)||(1288200-1288275)
chr7 (125-237)||(29477817-29477932)
chr7 (165-237)||(4579974-4580047)
[»] chr4 (4 HSPs)
chr4 (114-237)||(15020017-15020143)
chr4 (114-237)||(55081250-55081376)
chr4 (126-237)||(40684423-40684537)
chr4 (132-237)||(39991498-39991604)
[»] chr6 (6 HSPs)
chr6 (114-234)||(32814619-32814742)
chr6 (116-237)||(35130046-35130170)
chr6 (114-180)||(28969592-28969660)
chr6 (114-237)||(14042064-14042190)
chr6 (140-237)||(32551077-32551175)
chr6 (165-237)||(22610021-22610094)
[»] chr1 (6 HSPs)
chr1 (149-237)||(2493407-2493496)
chr1 (114-237)||(19309158-19309284)
chr1 (114-180)||(31064434-31064502)
chr1 (114-225)||(12906574-12906688)
chr1 (114-179)||(36725187-36725254)
chr1 (114-179)||(27761389-27761456)
[»] chr3 (4 HSPs)
chr3 (114-179)||(48435435-48435500)
chr3 (149-237)||(4662585-4662674)
chr3 (149-206)||(29067681-29067738)
chr3 (167-239)||(35456510-35456583)
[»] chr2 (2 HSPs)
chr2 (143-237)||(41558643-41558738)
chr2 (165-239)||(13291079-13291154)
[»] scaffold0555 (1 HSPs)
scaffold0555 (115-179)||(4756-4822)
[»] scaffold0009 (1 HSPs)
scaffold0009 (115-191)||(148757-148835)
[»] chr8 (2 HSPs)
chr8 (187-239)||(21416377-21416430)
chr8 (143-180)||(34517677-34517714)
[»] chr5 (4 HSPs)
chr5 (114-180)||(16747778-16747846)
chr5 (205-237)||(6155022-6155054)
chr5 (198-237)||(13290886-13290926)
chr5 (114-179)||(18265054-18265121)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 1288754 - 1288879
Alignment:
Q  114 gtgttgacaaactattcatttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtccttcaga 213  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1288754 gtgttgacaaactattcatttcttctccctttttatatcccgtcgtatttaaagagtgttcttaagaacttagtcccttcgagatataatgtccttcaga 1288853  T
Q  214 attaataatggtcttaagagcataat 239  Q
    ||||||||||||||||||||||||||    
T  1288854 attaataatggtcttaagagcataat 1288879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 1288200 - 1288275
Alignment:
Q  32 gaacaccaagtgtgtttgtgtgaattgaaaaattactatgtcccatatcaggtagattatacacacaatattagtg 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  1288200 gaacaccaagtgtgtttgtgtgaattgaaaaattattatgtcccatatccggtagattatacacacaatattagtg 1288275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 29477817 - 29477932
Alignment:
Q  125 ctattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataa 221  Q
    |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | ||||||||||    |||||| | ||||| ||||||| ||    
T  29477817 ctattcttttcttctccctccttttctgtcccttcggatttaaagagtgttcttaaggtcataatcccttcagtttataatatcccttcggaattaagaa 29477916  T
Q  222 tggtcttaagagcata 237  Q
    ||||||||||| ||||    
T  29477917 tggtcttaagaacata 29477932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 4580047 - 4579974
Alignment:
Q  165 aagagtgttcttaagaacttaatcccttcgagatataatgtcctt-cagaattaataatggtcttaagagcata 237  Q
    |||||||||||||||| | |||||||||   | ||||||||| || ||||||||| |||||| |||||||||||    
T  4580047 aagagtgttcttaagaccataatcccttttcggtataatgtcatttcagaattaagaatggttttaagagcata 4579974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 15020017 - 15020143
Alignment:
Q  114 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 210  Q
    |||||||||| |||||| |||||||| |||  |||| |||||||||| |||| |||| ||||||||||| | || |||||| |||||||||||||| |||    
T  15020017 gtgttgacaagctattcttttcttcttcctctttttctgtcccgtcggatttcaagaatgttcttaagaccatagtccctttgagatataatgtccattc 15020116  T
Q  211 agaattaataatggtcttaagagcata 237  Q
    | ||||||  |||||||||||||||||    
T  15020117 aaaattaaggatggtcttaagagcata 15020143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 55081250 - 55081376
Alignment:
Q  114 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc-cttc 210  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   ||||| ||| ||||    
T  55081250 gtgttgacgagctattcttttcctctccctctttttctgtcccttcgaatttaaagagtgttcttaaggccatagtcccttcggtttataacgtctcttc 55081349  T
Q  211 agaattaataatggtcttaagagcata 237  Q
    |||||||| ||||||||||||| ||||    
T  55081350 agaattaagaatggtcttaagaacata 55081376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 40684423 - 40684537
Alignment:
Q  126 tattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataat 222  Q
    ||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||| ||||   |||||||| |||| |||||||| |||    
T  40684423 tattcttttcttctccctgtttttctgtcccttcggatttaaagagtgttcttaaggtcatagtccattcggtttataatgtccctttagaattaagaat 40684522  T
Q  223 ggtcttaagagcata 237  Q
    |||||||||| ||||    
T  40684523 ggtcttaagaacata 40684537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 39991498 - 39991604
Alignment:
Q  132 tttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaa 230  Q
    ||||| |||||||||||| | || ||| |||||||||||||| |||||| |  | ||| |||| |||||||| | |||||  || ||| |||||||||||    
T  39991498 tttctcctccctttttatcttccatcggatttaaagagtgtttttaagaccacagtccattcgtgatataatctcccttcgaaagtaagaatggtcttaa 39991597  T
Q  231 gagcata 237  Q
    |||||||    
T  39991598 gagcata 39991604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 32814619 - 32814742
Alignment:
Q  114 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 210  Q
    |||||||| | |||||| |||| |||||||  ||||||||||||||  ||||||||||||||||||||| | || ||||||| ||| ||||| | |||||    
T  32814619 gtgttgacgagctattcttttcctctccctctttttatgtcccgtcaaatttaaagagtgttcttaagaccatagtcccttcaagaaataatttcccttc 32814718  T
Q  211 agaattaataatggtcttaagagc 234  Q
    |||||||| ||| |||| ||||||    
T  32814719 agaattaagaatagtctcaagagc 32814742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 35130170 - 35130046
Alignment:
Q  116 gttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcag 212  Q
    |||||||| |||||| |||| |||||||  |||| |||||| ||| ||||||||| ||||||||||  | || ||||||||   |||||||||| ||| |    
T  35130170 gttgacaatctattcttttcctctccctctttttctgtcccttcggatttaaagaatgttcttaaggtcatagtcccttcggtttataatgtccattcgg 35130071  T
Q  213 aattaataatggtcttaagagcata 237  Q
    |||||| ||||||||||||| ||||    
T  35130070 aattaagaatggtcttaagaacata 35130046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 28969592 - 28969660
Alignment:
Q  114 gtgttgacaaactattcatttcttctcccttttt--atgtcccgtcgtatttaaagagtgttcttaaga 180  Q
    |||||||| | |||||| |||||||||||| |||  ||||||||||| |||| ||||||||||||||||    
T  28969592 gtgttgacgagctattcttttcttctccctcttttcatgtcccgtcggattttaagagtgttcttaaga 28969660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 14042190 - 14042064
Alignment:
Q  114 gtgttgacaaactattcatttcttctcc--ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 210  Q
    |||||||| | |||||| ||||||||||  |||||| |||||| ||| |||||||| ||||||| |||  | || ||||||||   |||||||| |||||    
T  14042190 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagtgtgttctaaaggccatagtcccttcggtttataatgtcccttc 14042091  T
Q  211 agaattaataatggtcttaagagcata 237  Q
      |||||| ||||||||||||| ||||    
T  14042090 gaaattaagaatggtcttaagaacata 14042064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 32551077 - 32551175
Alignment:
Q  140 ccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcata 237  Q
    |||||||||| || ||||  ||||| |||||||||||||||   || | |||||||| ||||||||||  ||| |||||||||| ||||||||| ||||    
T  32551077 ccctttttatttctcgtcagatttatagagtgttcttaagactatagttccttcgagttataatgtccgatcaaaattaataatagtcttaagaacata 32551175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 22610094 - 22610021
Alignment:
Q  165 aagagtgttcttaagaacttaatcccttcgagatataatgtc-cttcagaattaataatggtcttaagagcata 237  Q
    |||||||||||||||| | |||||||||   | ||||||||| |||| ||||||| |||||| |||||||||||    
T  22610094 aagagtgttcttaagaccataatcccttttcggtataatgtcacttcggaattaagaatggttttaagagcata 22610021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 2493407 - 2493496
Alignment:
Q  149 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcata 237  Q
    |||||||| | ||||||||| |||| |||||| | || ||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||    
T  2493407 tgtcccgtaggatttaaagaatgtttttaagaccatagtcccttcgagaaataatgtcccttcggaattaagaatggtcttaagagcata 2493496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 19309158 - 19309284
Alignment:
Q  114 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 210  Q
    |||||||| | |||||| ||||||||||||  |||| || ||| ||| ||||||||||||||||||||  | || || |||||   |||||||||| |||    
T  19309158 gtgttgacgagctattcttttcttctccctctttttctgacccttcggatttaaagagtgttcttaaggtcatagtctcttcggtttataatgtcccttc 19309257  T
Q  211 agaattaataatggtcttaagagcata 237  Q
     ||||||||||||||||||||| ||||    
T  19309258 ggaattaataatggtcttaagaacata 19309284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 31064502 - 31064434
Alignment:
Q  114 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaaga 180  Q
    |||||||| |||||||| ||| ||||||||  ||||||||||| ||| |||||||||||||||||||||    
T  31064502 gtgttgacgaactattcttttattctccctctttttatgtcccttcggatttaaagagtgttcttaaga 31064434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 12906688 - 12906574
Alignment:
Q  114 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 210  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   |||||||| |||||    
T  12906688 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagagtgttcttaaggccatagtcccttcggtttataatgtcccttc 12906589  T
Q  211 agaattaataatggt 225  Q
     ||||||| ||||||    
T  12906588 ggaattaagaatggt 12906574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 36725254 - 36725187
Alignment:
Q  114 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 179  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  36725254 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagagtgttcttaag 36725187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 27761389 - 27761456
Alignment:
Q  114 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 179  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||    
T  27761389 gtgttgacgagctattcttttcctctccctctttttctgtcccttcgaatttaaagagtgttcttaag 27761456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 48435435 - 48435500
Alignment:
Q  114 gtgttgacaaactattcatttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaag 179  Q
    |||||||||| |||||| |||| |||| ||||||||||||| ||  ||||||||||||||||||||    
T  48435435 gtgttgacaagctattcttttcctctctctttttatgtcccttcagatttaaagagtgttcttaag 48435500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 4662674 - 4662585
Alignment:
Q  149 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcata 237  Q
    |||||| ||| ||||||||||||||||||||  | || ||||||||   || ||||| ||||| ||||||| ||||||||||||| ||||    
T  4662674 tgtcccttcggatttaaagagtgttcttaaggccatagtcccttcggtttaaaatgtcccttcggaattaagaatggtcttaagaacata 4662585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 29067681 - 29067738
Alignment:
Q  149 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc 206  Q
    |||||||||| |||||||||||||| |||||| | || || ||||||| |||||||||    
T  29067681 tgtcccgtcgaatttaaagagtgtttttaagatcatagtcacttcgagttataatgtc 29067738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 35456510 - 35456583
Alignment:
Q  167 gagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataat 239  Q
    |||||||||||||| |||||| |||    | |||||||||| ||| ||||||| ||||||||||||||||||||    
T  35456510 gagtgttcttaagaccttaattcctattcggtataatgtcccttcggaattaagaatggtcttaagagcataat 35456583  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 41558643 - 41558738
Alignment:
Q  143 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcata 237  Q
    ||||| |||||||||| ||||||||||||||| || || | || |||||| |||| |||| || |||||| |||||| |||| |||||||||||||    
T  41558643 tttttttgtcccgtcggatttaaagagtgttcatatgaccatagtccctttgagaaataacgtcccttcaaaattaaaaatgttcttaagagcata 41558738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 13291079 - 13291154
Alignment:
Q  165 aagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataat 239  Q
    |||||||||||||||| | ||  |||||| ||||||||||| ||||| ||||| | |||||||||||||| |||||    
T  13291079 aagagtgttcttaagatcatagacccttctagatataatgtcccttcggaattgacaatggtcttaagagtataat 13291154  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 4822 - 4756
Alignment:
Q  115 tgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 179  Q
    ||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  4822 tgttgacgagctattcttttcttctccctctttttttgtcccttcggatttaaagagtgttcttaag 4756  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 148757 - 148835
Alignment:
Q  115 tgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatccct 191  Q
    |||||||||||||||| |||| ||| |||  |||| |||||||||| | || |||||||||||||||| | ||||||||    
T  148757 tgttgacaaactattcttttcctctacctctttttctgtcccgtcggactttaagagtgttcttaagaccataatccct 148835  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 21416377 - 21416430
Alignment:
Q  187 tcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataat 239  Q
    ||||||||||| ||||||||| || |||||||| ||||||||||| ||||||||    
T  21416377 tcccttcgagaaataatgtcccttgagaattaagaatggtcttaatagcataat 21416430  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 34517714 - 34517677
Alignment:
Q  143 tttttatgtcccgtcgtatttaaagagtgttcttaaga 180  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  34517714 tttttatgtcccgtcggatttaaagagtgtttttaaga 34517677  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 16747778 - 16747846
Alignment:
Q  114 gtgttgacaaactattcatttcttctccc--tttttatgtcccgtcgtatttaaagagtgttcttaaga 180  Q
    |||||||| | ||||||||||||||||||  ||||||||| || ||| ||||||| | |||||||||||    
T  16747778 gtgttgacgagctattcatttcttctccctttttttatgttccatcggatttaaaaaatgttcttaaga 16747846  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 6155022 - 6155054
Alignment:
Q  205 tccttcagaattaataatggtcttaagagcata 237  Q
    ||||||||||| |||||||||||||||||||||    
T  6155022 tccttcagaatcaataatggtcttaagagcata 6155054  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 13290886 - 13290926
Alignment:
Q  198 tataatgtcctt-cagaattaataatggtcttaagagcata 237  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  13290886 tataatgtcctttcagaattaaaaatggtcttaagagcata 13290926  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 18265054 - 18265121
Alignment:
Q  114 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 179  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||    
T  18265054 gtgttgacgagctattcttttcctctccctctttttctgtcccttcggatttaaagagtgttcttaag 18265121  T

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