View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_high_3 (Length: 570)
Name: NF1621_high_3
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 47 - 559
Target Start/End: Original strand, 40547079 - 40547589
Alignment:
| Q |
47 |
ttataacagtgataaatttggtcatttttcatgggaatgtcgtagtgctcatataccactaaaaattcaccatttagcaaccagtttaatgaccgagtta |
146 |
Q |
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| T |
40547079 |
ttataacagtgataaatttggtcatttttcatgggaatgtcgtagtgctcatataccactaaaaattcaccatgtagcaaccagtttaatgaccgagtta |
40547178 |
T |
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| Q |
147 |
tttcagtcaccatagagaccaaattaatgagtctgtgatcgatttgtgaaatgactctaaaccactagtagctaatgt-gcatatgccaaggaatacaat |
245 |
Q |
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| T |
40547179 |
tttcagtcaccatagagacca----aataagtctgtgatcgatttgtgaaatgactctaaaccactagtagctaatgtggcatatgccaaggaatacaat |
40547274 |
T |
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| Q |
246 |
gcttaccttgaa--------tctaaaattcactcaagcaaaatgcttagcatatggctttgataaatatacaaagttatttctataaataaatattggct |
337 |
Q |
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| T |
40547275 |
gcttaccctaaaccctaaaccctaaaattcacttaagcaaaatgcttagcatatggctttgataaatatacaaaattatttctataaataaatattggct |
40547374 |
T |
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| Q |
338 |
aaatcttgagactttctttaattccgataaatttttcaaaatccaactcgtctaaagtatttcctatacaaattatacaagccaaggtnnnnnnnnnnnn |
437 |
Q |
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| T |
40547375 |
aaattttcagactttctttaattccgataaatttttcaaaatccaactcgtctaaagtatttcgtatacaaattatacaagtcaaggt-------aaaaa |
40547467 |
T |
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| Q |
438 |
nnnnnngcacagattatatattaattgaaccaagtgataatgagtttctcttatgacgaatcggtcaagagaaaccgaattcgattcttgatggaaacaa |
537 |
Q |
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| T |
40547468 |
aaaaaagcacagattatatattaattgaaccaagtgataatgagtttctcttttgatgaatcggtcaagagaaaccgaattcgattcttgatggaaacaa |
40547567 |
T |
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| Q |
538 |
ttcttgatcaaactttattctt |
559 |
Q |
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| T |
40547568 |
ttcttgatcaaactttattctt |
40547589 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 33179449 - 33179497
Alignment:
| Q |
495 |
gaatcggtcaagagaaaccgaattcgattcttgatggaaacaattcttg |
543 |
Q |
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| T |
33179449 |
gaatcgttcaggagaagccgagttcgattcctgatggaaacaattcttg |
33179497 |
T |
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