View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_high_35 (Length: 230)
Name: NF1621_high_35
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 7035661 - 7035875
Alignment:
| Q |
15 |
caaacagcctctttcggttaagaatccaatagtaagaaattcaattgcaattgatagctaacccacatacttgagatacacacattttttagacaaggga |
114 |
Q |
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| T |
7035661 |
caaacagcctctttcggttaagaatccaatagtaagaaattcaattgcaattgatagctaacccacatacttgagatacacacattttttagacaaggga |
7035760 |
T |
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| Q |
115 |
gaagattaaccttctgttgctgcttcagtttctccaacacttcaggagatatataaaacacctacgtagaataaaaaattatgaataatatcagtctgca |
214 |
Q |
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| T |
7035761 |
gaagattaaccttctgttgctgcttcagtttctccaacacttcgggagatatataaaacacctacgtggaataaaaaattatgaataatatcagtctgca |
7035860 |
T |
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| Q |
215 |
tacgaacaaaataca |
229 |
Q |
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|||| |||||||||| |
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| T |
7035861 |
tacggacaaaataca |
7035875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 7896905 - 7897115
Alignment:
| Q |
15 |
caaacagcctctttcggttaagaatccaatagtaagaaattcaattgcaattgatagctaacccacatacttgagatacacacattttttagacaaggga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
7896905 |
caaacagcctctttcggttaagaatccaatagtaagaaattcaattgcaattgatagctaacccacataattgagatacacaca-tttttagacaaggga |
7897003 |
T |
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| Q |
115 |
gaagattaaccttctgttgctgcttcagtttctccaacacttcaggagatatataaaacacctacgtagaataaaaaattatgaataatatcagtctgca |
214 |
Q |
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| T |
7897004 |
gaatattaaccttttgttgctgcttcagtgtctccaacacttcgggagata---caaaaacctacgtagaataaaaaattatgaataacatcagtgtgca |
7897100 |
T |
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| Q |
215 |
tacgaacaaaataca |
229 |
Q |
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| T |
7897101 |
tacgggcaaaataca |
7897115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 7039219 - 7039336
Alignment:
| Q |
16 |
aaacagcctct-ttcggttaagaatccaatagtaag-aaattcaa-ttgcaattgatag----ctaacccacatacttgagatacacacattttttagac |
108 |
Q |
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||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||| | |||||| ||| |
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| T |
7039219 |
aaacagcctctgttcggttaagaatccgatagtaaataaattcaacttgcaattgatagatagctagcccacatacttgagataca-atatttttaggac |
7039317 |
T |
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| Q |
109 |
aagggagaagattaacctt |
127 |
Q |
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|||||||| ||| |||||| |
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| T |
7039318 |
aagggagaggataaacctt |
7039336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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