View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1621_high_4 (Length: 568)

Name: NF1621_high_4
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1621_high_4
NF1621_high_4
[»] chr3 (19 HSPs)
chr3 (12-422)||(2441050-2441460)
chr3 (141-246)||(988652-988757)
chr3 (144-251)||(996806-996913)
chr3 (144-251)||(1013196-1013303)
chr3 (415-453)||(2440980-2441018)
chr3 (161-282)||(37758440-37758561)
chr3 (181-240)||(1891797-1891856)
chr3 (513-550)||(2440793-2440830)
chr3 (144-233)||(2679149-2679238)
chr3 (144-233)||(2687056-2687145)
chr3 (143-240)||(2697457-2697554)
chr3 (143-252)||(13478852-13478961)
chr3 (171-251)||(2651150-2651230)
chr3 (195-258)||(2458617-2458680)
chr3 (188-254)||(803979-804045)
chr3 (158-284)||(13525782-13525908)
chr3 (118-250)||(1003726-1003858)
chr3 (118-250)||(1021723-1021855)
chr3 (188-252)||(3745201-3745265)
[»] chr4 (2 HSPs)
chr4 (143-251)||(22672849-22672957)
chr4 (142-255)||(20020499-20020612)
[»] chr5 (4 HSPs)
chr5 (141-250)||(1428462-1428571)
chr5 (146-198)||(20305160-20305212)
chr5 (146-198)||(20309564-20309616)
chr5 (146-198)||(20292300-20292352)
[»] chr1 (2 HSPs)
chr1 (195-282)||(51382209-51382296)
chr1 (187-281)||(23896906-23897000)
[»] chr6 (1 HSPs)
chr6 (144-261)||(24418152-24418269)


Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 422
Target Start/End: Complemental strand, 2441460 - 2441050
Alignment:
Q  12 gaatattatacggagaatactcatactctgtgatgttggtggttaagttgttgagaacgggcccgagtgggtaagacttgagaacgtacagataggggaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2441460 gaatattatacggagaatactcatactctgtgatgttggtggttaagttgttgagaacgggcccgagtgggtaagacttgagaacgtacagataggggaa 2441361  T
Q  112 cccagtgtagcttacgcagtgaagatagcgtgtggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcag 211  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2441360 cccagtgtagcttacgcagtgaaggcagcgtgtggttgacaagctgaggtgcttcttggcgaatttgtgatcggtgattaaagaattccatgacttgcag 2441261  T
Q  212 aagcatcggagctgaaggaggagcttcacaggtagcctacacaggatctctgccaccaaatcaaacggaagcgtaggaagtggcgggtcgtaaagtgaat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2441260 aagcatcggagctgaaggaggagcttcacaggtagcctacacaggatctctgccaccaaatcaaacggaagcgtaggaagtggcgggtcataaagtgaat 2441161  T
Q  312 ggccagaagagcttaaggtagggaggacacacaagagctgcttgttaatggcagtcaattccaccatcataatgatactacacagcaaggttaatgaaag 411  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2441160 ggccagaagagcttaaggtagggaggacacacaagaactgcttgttaatggcagtcaattccaccatcataatgatactacacagcaaggttaatgaaag 2441061  T
Q  412 tatatatatat 422  Q
    |||||||||||    
T  2441060 tatatatatat 2441050  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 988757 - 988652
Alignment:
Q  141 gtgtggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcac 240  Q
    |||||||||||| ||| |||||||| || | ||||||| |||| | ||||||||||||||||||||||||  |||||||||| |||||||||||||||||    
T  988757 gtgtggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaattccatgacttgcaagagcatcggagttgaaggaggagcttcac 988658  T
Q  241 aggtag 246  Q
    ||||||    
T  988657 aggtag 988652  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 996913 - 996806
Alignment:
Q  144 tggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacagg 243  Q
    ||||||||| ||| ||||||||||| |  |||||| |||  | ||||| |||| |||| |||||||||  |||||||||||| |||||||||||||| ||    
T  996913 tggttgacatgctaaggtgcttcttagcaaatttgggattagagattagagaactccaggacttgcaggcgcatcggagctggaggaggagcttcacggg 996814  T
Q  244 tagcctac 251  Q
    ||||||||    
T  996813 tagcctac 996806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 1013303 - 1013196
Alignment:
Q  144 tggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacagg 243  Q
    ||||||||| ||| ||||||||||| |  |||||| |||  | ||||| |||| |||| |||||||||  |||||||||||| |||||||||||||| ||    
T  1013303 tggttgacatgctaaggtgcttcttagcaaatttgggattagagattagagaactccaggacttgcaggcgcatcggagctggaggaggagcttcacggg 1013204  T
Q  244 tagcctac 251  Q
    ||||||||    
T  1013203 tagcctac 1013196  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 415 - 453
Target Start/End: Complemental strand, 2441018 - 2440980
Alignment:
Q  415 atatatatggctaggtttcgtgagaaacacgattaccat 453  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2441018 atatatatggctaggtttcgtgagaaacacgattaccat 2440980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 37758440 - 37758561
Alignment:
Q  161 tgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacaggtagcctacacaggatct 260  Q
    |||||||| | ||||||| ||||   ||||||||||||| | |||||||||| ||||||||| || | ||| | ||| ||||| |||||||| || || |    
T  37758440 tgcttcttagcgaatttgggatccaagattaaagaattcaaggacttgcagaggcatcggagttgtaagagtaacttgacaggaagcctacatagaattt 37758539  T
Q  261 ctgccaccaaatcaaacggaag 282  Q
    ||||||||||||| || |||||    
T  37758540 ctgccaccaaatcgaaaggaag 37758561  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 1891797 - 1891856
Alignment:
Q  181 atcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcac 240  Q
    ||||| ||||| ||||||||||||||||||||   ||||||| |||||||||||||||||    
T  1891797 atcggagattagagaattccatgacttgcagacagatcggagttgaaggaggagcttcac 1891856  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 513 - 550
Target Start/End: Complemental strand, 2440830 - 2440793
Alignment:
Q  513 tgattattactccttcgttcattttcaattgtctttct 550  Q
    |||||||||||||||| |||||||||||||||||||||    
T  2440830 tgattattactccttcattcattttcaattgtctttct 2440793  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 2679149 - 2679238
Alignment:
Q  144 tggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggagga 233  Q
    ||||||||| ||| ||||||||||| |  |||||  |||||| ||| | ||| ||||||||||||||||  |||||||| ||||||||||    
T  2679149 tggttgacacgctaaggtgcttcttagcaaattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggagga 2679238  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 2687056 - 2687145
Alignment:
Q  144 tggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggagga 233  Q
    |||||||||| || ||||||||||| |  |||||  |||||| ||| | ||| ||||||||||||||||  |||||||| ||||||||||    
T  2687056 tggttgacaatctaaggtgcttcttagcaaattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggagga 2687145  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 2697457 - 2697554
Alignment:
Q  143 gtggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcac 240  Q
    |||||||||| ||| |||||||||||||| ||  ||  ||| ||||||| ||||||||||||||| |||| |||||| || || ||||| | ||||||    
T  2697457 gtggttgacatgctaaggtgcttcttggtaaaactggtatcagtgattagagaattccatgacttacagacgcatcgaagttgtaggagtaacttcac 2697554  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 13478961 - 13478852
Alignment:
Q  143 gtggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacag 242  Q
    |||||||||| ||  || ||||| ||||  |||||| |||| ||||| |||||||||||  |||| | ||  ||||| || ||||||||||||||||| |    
T  13478961 gtggttgacatgcgaagatgcttgttggcaaatttgcgatcagtgataaaagaattccacaacttactgacacatcgaagttgaaggaggagcttcacgg 13478862  T
Q  243 gtagcctaca 252  Q
    ||||||||||    
T  13478861 gtagcctaca 13478852  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 2651150 - 2651230
Alignment:
Q  171 tgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacaggtagcctac 251  Q
    ||||||||||||||| ||| | ||||||||||| ||||||||  ||||| || |||| ||||||||| || |||| |||||    
T  2651150 tgaatttgtgatcggagataagagaattccatggcttgcagacacatcgaagttgaaagaggagctttaccggtaacctac 2651230  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 2458680 - 2458617
Alignment:
Q  195 aattccatgacttgcagaagcatcggagctgaaggaggagcttcacaggtagcctacacaggat 258  Q
    ||||||| |||||||| ||||| || || ||||||||||||||||| |||||||| | ||||||    
T  2458680 aattccacgacttgcataagcaacgaagttgaaggaggagcttcactggtagcctgcccaggat 2458617  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 803979 - 804045
Alignment:
Q  188 attaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacaggtagcctacaca 254  Q
    |||| |||||||||||||||||| | ||||||||| ||||| | || ||||||||||| || |||||    
T  803979 attagagaattccatgacttgcaaacgcatcggagttgaagtaagaacttcacaggtaaccaacaca 804045  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 284
Target Start/End: Complemental strand, 13525908 - 13525782
Alignment:
Q  158 aggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacaggtagcctacacagga 257  Q
    ||||||||||||| ||||||| |||| | ||| || || ||||| || ||||| | ||||||||  || | |||    |||||||| |||||||| || |    
T  13525908 aggtgcttcttggcgaatttgggatcagagatcaatgatttccaggatttgcatacgcatcggaattgcaagagtgatttcacaggaagcctacaaagaa 13525809  T
Q  258 tctctgccaccaaatcaaacggaagcg 284  Q
    |||||| |||||||||||| |||||||    
T  13525808 tctctggcaccaaatcaaagggaagcg 13525782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 1003858 - 1003726
Alignment:
Q  118 gtagcttacgcagtgaagatagcgtgtggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcat 217  Q
    ||||||||| ||||||||   | |||||||||| |  || |||||||||||    ||||||  || || ||||| | ||||||||||||||||   ||||    
T  1003858 gtagcttacacagtgaagggtgtgtgtggttgaaagactaaggtgcttcttatgaaatttggtattggagattagaaaattccatgacttgcaagcgcat 1003759  T
Q  218 cggagctgaaggaggagcttcacaggtagccta 250  Q
    || || ||||||||||||||||| |||| ||||    
T  1003758 cgaagttgaaggaggagcttcactggtaaccta 1003726  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 1021855 - 1021723
Alignment:
Q  118 gtagcttacgcagtgaagatagcgtgtggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcat 217  Q
    ||||||||| ||||||||   | |||||||||| |  || |||||||||||    ||||||  || || ||||| | ||||||||||||||||   ||||    
T  1021855 gtagcttacacagtgaagggtgtgtgtggttgaaagactaaggtgcttcttatgaaatttggtattggagattagaaaattccatgacttgcaagcgcat 1021756  T
Q  218 cggagctgaaggaggagcttcacaggtagccta 250  Q
    || || ||||||||||||||||| |||| ||||    
T  1021755 cgaagttgaaggaggagcttcactggtaaccta 1021723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 3745265 - 3745201
Alignment:
Q  188 attaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacaggtagcctaca 252  Q
    |||| |||||||||||||||||| |  |||||||  ||||||| || |||||| |||||||||||    
T  3745265 attagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctaca 3745201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 22672849 - 22672957
Alignment:
Q  143 gtggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacag 242  Q
    |||||||||| ||| ||||||||||| | ||||||| |||| | ||||| |||||||||||||||||||  |||| |||||||||||||||||||||| |    
T  22672849 gtggttgacaggctaaggtgcttcttagcgaatttgcgatcagagattagagaattccatgacttgcaggcgcattggagctgaaggaggagcttcaccg 22672948  T
Q  243 gtagcctac 251  Q
    ||| |||||    
T  22672949 gtaacctac 22672957  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 255
Target Start/End: Original strand, 20020499 - 20020612
Alignment:
Q  142 tgtggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcaca 241  Q
    ||||||||||| ||  |||||||||||||  |||||  |||  | ||| | |||||||||||| || || |  ||||| || |||||||||||||||||     
T  20020499 tgtggttgacatgcgaaggtgcttcttggaaaatttaggatgagagatgagagaattccatgaattacatacacatcgaagttgaaggaggagcttcact 20020598  T
Q  242 ggtagcctacacag 255  Q
    |||| |||||||||    
T  20020599 ggtaacctacacag 20020612  T

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Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 1428462 - 1428571
Alignment:
Q  141 gtgtggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcac 240  Q
    |||||||||||| ||| || |||||||||| ||||||| |||| ||||||| |||||| |||| |||||| | ||||||||| ||||||||||| |||||    
T  1428462 gtgtggttgacatgctaagttgcttcttggcgaatttgagatcagtgattagagaattacatgccttgcaaaggcatcggagttgaaggaggagtttcac 1428561  T
Q  241 aggtagccta 250  Q
     |||||||||    
T  1428562 gggtagccta 1428571  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 20305212 - 20305160
Alignment:
Q  146 gttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaatt 198  Q
    ||||||||||  ||||||||||||| ||||||| |||||||||||| ||||||    
T  20305212 gttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaatt 20305160  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 20309616 - 20309564
Alignment:
Q  146 gttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaatt 198  Q
    ||||||||||  ||||||||||||| ||||||| |||||||||||| ||||||    
T  20309616 gttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaatt 20309564  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 20292352 - 20292300
Alignment:
Q  146 gttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaatt 198  Q
    ||||||||||  ||||||||||||| ||||||| ||| |||||||| ||||||    
T  20292352 gttgacaagcgaaggtgcttcttggcgaatttgggattggtgattagagaatt 20292300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 51382209 - 51382296
Alignment:
Q  195 aattccatgacttgcagaagcatcggagctgaaggaggagcttcacaggtagcctacacaggatctctgccaccaaatcaaacggaag 282  Q
    |||||||||||||||||| ||| ||||| ||||||||| | ||||| || |||   |||||||| |||||||||| ||| ||||||||    
T  51382209 aattccatgacttgcagacgcaacggagttgaaggaggtgtttcacggggagcaggcacaggatttctgccaccagatcgaacggaag 51382296  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 23896906 - 23897000
Alignment:
Q  187 gattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacaggtagcctacacaggatctctgccaccaaatcaaacggaa 281  Q
    ||||| |||||||||||||||||||| ||| ||||  || ||||||| ||| ||||| || || |||||||| ||  |||| | |||||||||||    
T  23896906 gattagagaattccatgacttgcagacgcagcggaattgtaggaggaacttgacagggagtctgcacaggatttcaaccacgagatcaaacggaa 23897000  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 24418152 - 24418269
Alignment:
Q  144 tggttgacaagctgaggtgcttcttggtgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacagg 243  Q
    ||||||||||||  |||||||| || | ||||||| |||| | |||||| |||||  | ||||||||||  || || || |||||||| | |||||| ||    
T  24418152 tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacggg 24418251  T
Q  244 tagcctacacaggatctc 261  Q
     ||||||||||| |||||    
T  24418252 aagcctacacagaatctc 24418269  T

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