View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1621_high_8 (Length: 465)
Name: NF1621_high_8
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 27085568 - 27086025
Alignment:
| Q |
1 |
tttcctgaaaacccaaatgtttcaactcacttagagacgttactgcaccactagcttccaattccaaagagtttattgagtttgtaacataatcagcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27085568 |
tttcctgaaaacccaaatgtttcaactcacttagagacgttactgcaccactagcttccaattccaaagagtttattgagtttgtaacataatcagcagt |
27085667 |
T |
|
| Q |
101 |
gaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcacttacttttaaaacaacatttacatctataata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
27085668 |
gaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagcacactcacttttaaaacaacatttacatctataata |
27085767 |
T |
|
| Q |
201 |
gaattcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
27085768 |
gaattcccataataccctttaggtaaagtatcataatcctttaagttgcgtctactaccaactgcaatggttagcgctgttaaaccattgcttttaagtt |
27085867 |
T |
|
| Q |
301 |
ttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaatttaagtcc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
27085868 |
ttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtct |
27085967 |
T |
|
| Q |
401 |
tgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattt |
458 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27085968 |
tcttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattt |
27086025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 63 - 363
Target Start/End: Original strand, 27056465 - 27056764
Alignment:
| Q |
63 |
tccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttga |
162 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27056465 |
tccaaagagtttattgagtttgtgacataatcagcaatgaaagcaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcgttga |
27056564 |
T |
|
| Q |
163 |
gctcacttacttttaaaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaac |
262 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
27056565 |
gctcactcacttttaaaacaacatttacatctatagtagaatttccatattaccctttaggtaaagtatcataatcctccaagttgcgtctaataccaac |
27056664 |
T |
|
| Q |
263 |
tgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctt |
362 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27056665 |
tgcaatggtcagcactgtttcaccattgctgttaagttttaaggctcttgctcttgacctctacacataacctgcaagtac-tcaaaagttgtgaacctt |
27056763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 27041131 - 27041349
Alignment:
| Q |
1 |
tttcctgaaaacccaaatgtttcaactcacttagagacgttactgcaccactagcttccaattccaaagagtttattgagtttgtaacataatcagcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27041131 |
tttcctgaaaacccaaatgtttcaactcacttagagacgttactgcaccactagcttccaattccaaagagtttattgagtttgtaacataatcagcagt |
27041230 |
T |
|
| Q |
101 |
gaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcacttacttttaaaacaacatttacatctataata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
27041231 |
gaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcactcacttttaaaacaacatttacatctatagta |
27041330 |
T |
|
| Q |
201 |
gaattcccataataccctt |
219 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
27041331 |
gaatttccataataccctt |
27041349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 63 - 455
Target Start/End: Original strand, 27062507 - 27062893
Alignment:
| Q |
63 |
tccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttga |
162 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| | || |
|
|
| T |
27062507 |
tccaaagagtttattgagtttcttacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaacgattttatagagtggcatttcatcga |
27062606 |
T |
|
| Q |
163 |
gctcacttacttttaaaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaac |
262 |
Q |
| |
|
| ||||| |||||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||| |
|
|
| T |
27062607 |
gttcactcacttttaaaacaacttttgcatctatggtagaattgccataataccctttaggtaaagtttcataatccatcaagtttcgtctgataccaac |
27062706 |
T |
|
| Q |
263 |
tgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctt |
362 |
Q |
| |
|
| | |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27062707 |
taacacatttagcattgttttgtcattgctgctaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctt |
27062806 |
T |
|
| Q |
363 |
annnnnnnnnnnnnattcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtatta |
455 |
Q |
| |
|
| |||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
27062807 |
atattttcg------ttcatcaaactcaacttaagtcttgttatcgtttcgccctctactttaaaacaatattgcttaataattttagtatta |
27062893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 63 - 455
Target Start/End: Original strand, 27069574 - 27069966
Alignment:
| Q |
63 |
tccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttga |
162 |
Q |
| |
|
|||| |||||| ||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | || |
|
|
| T |
27069574 |
tccacagagttgattgaattagtaacataatcagtggtgaaagaaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcatcga |
27069673 |
T |
|
| Q |
163 |
gctcacttacttttaaaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaac |
262 |
Q |
| |
|
||||||| |||||||||||||| ||| |||| || |||||||||| ||||||||||| |||||||||||| ||||| ||||||| ||||| ||||||| |
|
|
| T |
27069674 |
gctcactcacttttaaaacaacttttgcatccatggtagaattcccgtaataccctttcggtaaagtatcaaaatccatcaagttacgtctcataccaac |
27069773 |
T |
|
| Q |
263 |
tgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctt |
362 |
Q |
| |
|
| || | |||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |
|
|
| T |
27069774 |
taacatattcagcattgttttatcattgctgctaagctttaaggctcttgctcttgacctccacacataacctgcaagaacttcaaaagttgtaaaccct |
27069873 |
T |
|
| Q |
363 |
annnnnnnnnnnnnattcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtatta |
455 |
Q |
| |
|
| ||||||||||||||| ||||||| ||||||| |||| ||||||||||||||| ||||||| ||||| || ||||||||| |
|
|
| T |
27069874 |
attttttcacttttattcatcaaactcaacttaagtcttgttatcgtttcgccctctactttaaaagaatattgcttaataattgtagtatta |
27069966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 262 - 458
Target Start/End: Original strand, 27041351 - 27041547
Alignment:
| Q |
262 |
ctgcaatggttagcactgttaaaccattgctgctaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacct |
361 |
Q |
| |
|
|||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27041351 |
ctgcaatggtcaacactgtttcaccattgctgttaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacct |
27041450 |
T |
|
| Q |
362 |
tannnnnnnnnnnnnattcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattt |
458 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27041451 |
cattttttcatttttattcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattt |
27041547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 103 - 363
Target Start/End: Original strand, 27098336 - 27098596
Alignment:
| Q |
103 |
aagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcacttacttttaaaacaacatttacatctataataga |
202 |
Q |
| |
|
||||||| |||||||||||| | || |||||||| |||||||||||||| |||| | ||||||||| |||||||| ||| ||| |||| | | || |
|
|
| T |
27098336 |
aagcaatgtttttagtctctctgatgagcttaataatttcatagagtggcctttcatcgagctcactaacttttaacacagtgtttgcatcaacacatga |
27098435 |
T |
|
| Q |
203 |
attcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagtttt |
302 |
Q |
| |
|
|||||||||||| || |||||||||| |||| |||||||||||||||||||| |||| || ||||||| || |||||| |||||||||| |||||||| |
|
|
| T |
27098436 |
attcccataataaccattaggtaaaggatcaaaatccttcaagttgcgtctaatacctgctacaatggtcagtactgtttcaccattgctgttaagtttt |
27098535 |
T |
|
| Q |
303 |
aaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctta |
363 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
27098536 |
aaggctcttgctcttgatctccaaacataacctgcaattgattcaaaagttgtgaacctta |
27098596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 103 - 435
Target Start/End: Original strand, 27105335 - 27105667
Alignment:
| Q |
103 |
aagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcacttacttttaaaacaacatttacatctataataga |
202 |
Q |
| |
|
||||||| |||||||||||| | || || ||||| |||||||||||||| |||| | |||||| || |||||||| ||| ||| |||| | | || |
|
|
| T |
27105335 |
aagcaatgtttttagtctctcttattaggttaataatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatga |
27105434 |
T |
|
| Q |
203 |
attcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcactgttaaaccattgctgctaagtttt |
302 |
Q |
| |
|
|||||||||||| || |||||||||| ||| |||||||||| ||||||||| ||||| || ||||||| | ||||||| ||||||| || |||||||| |
|
|
| T |
27105435 |
attcccataataaccattaggtaaaggttcaaaatccttcaacttgcgtctaataccagctacaatggtcaacactgtttcaccattgttgttaagtttt |
27105534 |
T |
|
| Q |
303 |
aaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaatttaagtcctg |
402 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| || |
|
|
| T |
27105535 |
aaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttg |
27105634 |
T |
|
| Q |
403 |
ttatcatttcaccctctactttaaaacaatatt |
435 |
Q |
| |
|
||| |||||||||||| || ||||||||||||| |
|
|
| T |
27105635 |
ttaacatttcaccctccacattaaaacaatatt |
27105667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 78 - 332
Target Start/End: Original strand, 27045580 - 27045834
Alignment:
| Q |
78 |
gagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcacttactttta |
177 |
Q |
| |
|
|||||| | |||||||||| | | ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
27045580 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
27045679 |
T |
|
| Q |
178 |
aaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatccttcaagttgcgtctactaccaactgcaatggttagcac |
277 |
Q |
| |
|
| ||||| ||| |||| | | ||| ||| |||||||||||| |||| |||| ||||||| | |||| | |||||||| |||||||| || | | || |
|
|
| T |
27045680 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacat |
27045779 |
T |
|
| Q |
278 |
tgttaaaccattgctgctaagttttaaggctcttgctcttgacctccacacataa |
332 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27045780 |
tgtttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataa |
27045834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27062415 - 27062480
Alignment:
| Q |
1 |
tttcctgaaaacccaaatgtttcaactcacttagagacgttactgcaccactagcttccaattcca |
66 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27062415 |
tttcctgaaaacccaaatgtttccactctgttagaaccgttactgcaccactagcttccaattcca |
27062480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27056374 - 27056438
Alignment:
| Q |
1 |
tttcctgaaaacccaaatgtttcaactcacttagagacgttactgcaccactagcttccaattcca |
66 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
27056374 |
tttcctgaaaatccaaatgtttcaattcact-agaaccgttactgcaccactatcttccaattcca |
27056438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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