View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1621_low_12 (Length: 413)
Name: NF1621_low_12
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 36923091 - 36923479
Alignment:
| Q |
17 |
agtattgagaggaagttaatgtcttttgttattgagaacggatcagaaattgaaggcatatttcaaatgaagggattcccaagtgataatggacaacaag |
116 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36923091 |
agtattgagaagaagttaatgtcttttattattgagaacggatcagaaattgaaggcatatttcaaatgaagggattcccaagtgagaatggacaacaag |
36923190 |
T |
|
| Q |
117 |
tgatatcttggttagaagaccttaagtgtgtcaatttgccaaagctaatgtatatatggatgggtgccaaacatagtttgagccttcaacatcttcacaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36923191 |
tgatatcttggttagaagaccttaagtgtgtcaatttgccaaagctaatgtatatatggatgggtgccaaacatagtttgagccttcaacatcttcacaa |
36923290 |
T |
|
| Q |
217 |
aataaacatttgcaattgtccaaaactaaagtctatcttctccatttctgtctcgagagtcctgcctctgttgaagatcctagtggtagaaaagtgtgat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36923291 |
aataaacatttgcaattgtccaaaactaaagtctatcttctccatttctgtcttgagagtcctgcctctgttgaagatcctagtggtagaacagtgtgat |
36923390 |
T |
|
| Q |
317 |
gaattggagcaaatcattgaagatgacgctgaagaaaatgaaaatgtccagagtcctcaagtttgcttctcacagctaaagtttcttct |
405 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36923391 |
gaattggatcaaatcattgaagatgacgctgaagaaaatgaaaatgtccagagtcctcaagtttgcttctcacagctaaagtttcttct |
36923479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University