View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_low_20 (Length: 318)
Name: NF1621_low_20
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 61 - 297
Target Start/End: Complemental strand, 44869565 - 44869329
Alignment:
| Q |
61 |
acaaacaaggaataagctaaactaaaatacagaatgtttgagttgagtgtagctaacaatactgcatttttatgagctactacatgttgcctatcaacag |
160 |
Q |
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| T |
44869565 |
acaaacaaggaataagctaaactaaaatacagaatgtttgagttgagtgtagctaacaatactgcatttttatgagctactacatgttgcctatcaacag |
44869466 |
T |
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| Q |
161 |
caaataagcaatgtgtttcgacatcaaactgtcgtaatcactaggccgttgaacctcgcagaccgccacagatggatgcagcagataacaaatatcttcc |
260 |
Q |
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| T |
44869465 |
caaataagcaatgtgtttcgacatcaaactgtcgtaatcactaggccgttgaacctcgcagaccgccacagatggatgcagcagataacaaatatcttcc |
44869366 |
T |
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| Q |
261 |
ttctgttaaatcattctgaatctgaattattaacggt |
297 |
Q |
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| T |
44869365 |
ttctgttaaatcattctgaatctgaattattaacggt |
44869329 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 47558959 - 47558997
Alignment:
| Q |
235 |
gatgcagcagataacaaatatcttccttctgttaaatca |
273 |
Q |
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| T |
47558959 |
gatgcagcagataacaaatatcttccttcagttaaatca |
47558997 |
T |
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