View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_low_23 (Length: 290)
Name: NF1621_low_23
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 27041161 - 27040900
Alignment:
| Q |
10 |
agtgagatgaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattttgtacctgcaccatgcaagatgcttgccaccatcg |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||| ||| |
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| T |
27041161 |
agtgagttgaaacatttgggttttcaggaaaatttaaattttgaaggctatgaattagtgaattttttaactgcaccatgcaagatgcttggcaccctcg |
27041062 |
T |
|
| Q |
110 |
atacgtgttttttcttttctcctaataaacttgatgatgatgatccatcaatggaaggaggagttaggatatttacatcactccctgttgctgctatgcc |
209 |
Q |
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|||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27041061 |
atacgtgtattttctcatctcctaataaacttgatgatcatgatctatcaatggaaggaggagttaggatatttacatcactccctgttgctgctatgcc |
27040962 |
T |
|
| Q |
210 |
taagttcagggacgaaattgaagctttaaggtttcttcactcgaagttgtaggagatccaca |
271 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
27040961 |
taagttcaaggacgaaattgaagctttaagttttcttcactcgaagttgtaggagacccaca |
27040900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 27062437 - 27062209
Alignment:
| Q |
18 |
gaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattttgtacctgcaccatgcaagatgcttgccaccatcgatacgtgt |
117 |
Q |
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|||||||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | || |
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| T |
27062437 |
gaaacatttgggttttcaggaaaatttagattttggaggttatgaattagtgaattttctacctgcaccatgcaagatgcttgccaccgtcgatgcatgc |
27062338 |
T |
|
| Q |
118 |
tttttcttttctcctaataaacttgatgatgatgatccatcaatggaaggaggagttaggatatttacatcactccctgttgctgctatgcctaagttca |
217 |
Q |
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| T |
27062337 |
attttctcatcagctaataaacttgatgatcatgatccatcaatggatggaggagttaggatatttacttcactccccgttgctgctatgcctaagttca |
27062238 |
T |
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| Q |
218 |
gggacgaaattgaagctttaaggtttctt |
246 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
27062237 |
aggacgaaattgaagctttaaggtttctt |
27062209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 27069500 - 27069251
Alignment:
| Q |
22 |
catttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattttgtacctgcaccatgcaagatgcttgccaccatcgatacgtgttttt |
121 |
Q |
| |
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|||||||||||||| |||||| || |||||| || ||||||| | |||||||| ||||| ||||| |||||||||||||| ||| | ||| |||| ||| |
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| T |
27069500 |
catttgggttttcatgaaaatatagattttggaggctatgaagttgtgaatttagtaccagcaccgtgcaagatgcttgctaccgttgatgcgtgcattt |
27069401 |
T |
|
| Q |
122 |
tcttttctcctaataaacttgatgatgatgatccatcaatggaaggaggagttaggatatttacatcactccctgttgctgctatgcctaagttcaggga |
221 |
Q |
| |
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||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| || |||||||||||||||| ||| ||||||||||||| ||| |
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| T |
27069400 |
tctcgtctcctaataaacttgatgatcatgatccatcaatggatggaggagttaggattttcacatcactccctgttgatgccatgcctaagttcaagga |
27069301 |
T |
|
| Q |
222 |
cgaaattgaagctttaaggtttcttcactcgaagttgtaggagatccaca |
271 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
27069300 |
cgaaattgaagctttaaggtttctttactcgaagttgtaggtgatccaca |
27069251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 27085598 - 27085412
Alignment:
| Q |
10 |
agtgagatgaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattttgtacctgcaccatgcaagatgcttgccaccatcg |
109 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||| ||| |
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| T |
27085598 |
agtgagttgaaacatttgggttttcaggaaaatttaaattttgaaggctatgaattagtgaattttttaactgcaccatgcaagatgcttggcaccctcg |
27085499 |
T |
|
| Q |
110 |
atacgtgttttttcttttctcctaataaacttgatgatgatgatccatcaatggaaggaggagttaggatatttacatcactccctg |
196 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27085498 |
atacgtgtattttctcatctcctaataaacttgatgatcatgatctgtcaatggaaggaggagttaggatatttacatcactccctg |
27085412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 27056397 - 27056159
Alignment:
| Q |
17 |
tgaaacatttgggttttcaggaaaatttaaattttgaagtctatgaattagtgaattttgtacc--tgcaccatgcaagatgcttgccaccatcgatacg |
114 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| || |||||||| ||||||||||||| |||||||| |
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| T |
27056397 |
tgaaacatttggattttcaggaaaatttaaattttgaaggctatgaattagtgaattttttacctgtgtaccatgcatgatgcttgccaccctcgatacg |
27056298 |
T |
|
| Q |
115 |
tgttttttcttttctcctaataaacttgatgatgatgatccatcaatggaaggaggagttaggatatttacatcactccctgttgctgctatgcctaagt |
214 |
Q |
| |
|
||| |||||| |||||||||||||| ||||| |||||||||| |||||| |||||||| ||| ||||||| |||||||||||| |
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| T |
27056297 |
tgtattttctcatctcctaataaact---------tgatcgatcaatggaaagaggag---------ttacatcattccatgttgctactatgcctaagt |
27056216 |
T |
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| Q |
215 |
tcagggacgaaattgaagctttaaggtttcttcactcgaagttgtaggagatccaca |
271 |
Q |
| |
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||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
27056215 |
tcaaggacgaaattgaagctttaaggtttctttagtcgaagttgtaggagatccaca |
27056159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 58 - 239
Target Start/End: Complemental strand, 27045452 - 27045271
Alignment:
| Q |
58 |
tatgaattagtgaattttgtacctgcaccatgcaagatgcttgccaccatcgatacgtgttttttcttttctcctaataaacttgatgatgatgatccat |
157 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| ||| |||| | | || ||| ||||| |||||| ||||||||||||||||||||||| |
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| T |
27045452 |
tatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttggaagggtgcattttcgcatctcctggtaaacttgatgatgatgatccat |
27045353 |
T |
|
| Q |
158 |
caatggaaggaggagttaggatatttacatcactccctgttgctgctatgcctaagttcagggacgaaattgaagctttaag |
239 |
Q |
| |
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||||| |||||||||||| ||| ||||||||||||||||||||||| ||||| | ||||| ||| ||||||||||||||||| |
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|
| T |
27045352 |
caatgaaaggaggagttaagatttttacatcactccctgttgctgccatgccaaggttcaaggaggaaattgaagctttaag |
27045271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 27079709 - 27079615
Alignment:
| Q |
102 |
caccatcgatacgtgttttttcttttctcctaataaacttgatgatgatgatccatcaatggaaggaggagttaggatatttacatcactccctg |
196 |
Q |
| |
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|||| ||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27079709 |
caccctcgatacgtgtattttctcatctcctaataaacttgatgatcatgatctgtcaatggaaggaggagttaggatatttacatcactccctg |
27079615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 27098120 - 27098001
Alignment:
| Q |
127 |
tctcctaataaacttgatgatgatgatccatcaatggaaggaggagttaggatatttacatcactccctgttgctgctatgcctaagttcagggacgaaa |
226 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| ||||||| |||| ||| ||||| |||||||||||||||| ||||| ||||||| ||| |||| |
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| T |
27098120 |
tctcctaataaatttgacaatgatgatccatcaatgaaaggaggggttaagatttttactacactccctgttgctgccatgcccaagttcaaggaggaaa |
27098021 |
T |
|
| Q |
227 |
ttgaagctttaaggtttctt |
246 |
Q |
| |
|
||||||||||||| |||||| |
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| T |
27098020 |
ttgaagctttaagatttctt |
27098001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 27105118 - 27105000
Alignment:
| Q |
128 |
ctcctaataaacttgatgatgatgatccatcaatggaaggaggagttaggatatttacatcactccctgttgctgctatgcctaagttcagggacgaaat |
227 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||| ||||||| ||| ||| ||||| |||||||||||||||| ||||| ||||||| ||| ||||| |
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| T |
27105118 |
ctcctaataaatttgacaatgatgatccatctatgaaaggagggattaagatttttactacactccctgttgctgccatgcccaagttcaaggaggaaat |
27105019 |
T |
|
| Q |
228 |
tgaagctttaaggtttctt |
246 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
27105018 |
tgaagctttaagatttctt |
27105000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 19414123 - 19414025
Alignment:
| Q |
135 |
taaacttgatgatgatgatccatcaatggaaggaggagttaggatatttacatcactccctgttgctgctatgcctaagttcagggacgaaattgaagc |
233 |
Q |
| |
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||||||||||||| | |||||||| ||| ||||||||| ||||| || | | |||||||||||| ||| ||||| ||||||| ||| ||||| ||||| |
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| T |
19414123 |
taaacttgatgatcaagatccatcgatgaaaggaggagcaaggattttcataacactccctgttgatgccatgcccaagttcaaggaagaaatggaagc |
19414025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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