View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_low_29 (Length: 250)
Name: NF1621_low_29
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_low_29 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 16618006 - 16617765
Alignment:
| Q |
11 |
caaaggcgagggacccaaaaaactgacgctgcgacctgtaattttacacaagtagaagaattacttcattcatgcattcaaacttcttccaaaatcaccc |
110 |
Q |
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| T |
16618006 |
caaaggcgagggacccaaaaagctggcgctgcgacatgtaattttacacaagtagaagaattacttcattcatgcattcaaacttcttccaaaatcaccc |
16617907 |
T |
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| Q |
111 |
aaagtcaatttacaccataacaattgcttcattcatgcattcattttcatcgcagttctaatcaatcattcaaaacacgcaaaatttattc--aaatata |
208 |
Q |
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| T |
16617906 |
aaagtcaatttacaccataacaattgcttcattcatgcattcattttcatcgcagttctaatcaatcattcaaaacacgcaaaatttattcaaaaatata |
16617807 |
T |
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| Q |
209 |
aatttattcaaaatttatttggtctaatacacaactttattc |
250 |
Q |
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| T |
16617806 |
aatttattcaaaatttattcggtctaatacacaactttattc |
16617765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 25850046 - 25849829
Alignment:
| Q |
42 |
cgacctgtaattttacacaagtagaagaattacttcattcatgcattcaaactt---------cttccaaaatcacccaaagtcaatttacaccataaca |
132 |
Q |
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| T |
25850046 |
cgacctgtaatttaacacaagcagaagaattgtttcattcatgcattcaaactctcaaacttacttccaaaatcacccaaagtcaatttacaccataaca |
25849947 |
T |
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| Q |
133 |
attgcttcattcatgcattcattttcatcgcagttctaatcaatcattcaaaacacgcaaaatttattcaaatataaatttattcaaaatttatttggtc |
232 |
Q |
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| T |
25849946 |
attgtttccttcatgcattcattttcatcgcagttctaatcaatcgttcaaaatacgcaaaatttattaaaacacaaacttattcaaaatttattcggta |
25849847 |
T |
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| Q |
233 |
taatacacaactttattc |
250 |
Q |
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| T |
25849846 |
taatacacaacattattc |
25849829 |
T |
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