View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_low_32 (Length: 238)
Name: NF1621_low_32
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_low_32 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 6667673 - 6667831
Alignment:
| Q |
74 |
ttatgctaacaacttgctttgccttttcccttcaccaatttggctcacttttatccttcccataatttcttattccctatctttcactttcattcagatg |
173 |
Q |
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| T |
6667673 |
ttatgctaacaacttgctttgccttttcccttcaccaatttggctcacttttacccttcccgtaatttcttattccctatctttcactttcattcagatg |
6667772 |
T |
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| Q |
174 |
gggtttgggttttcacagccacgccaccgcttgcaaccactaccacatctccttgcaaccaccgc |
238 |
Q |
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| T |
6667773 |
------gggttttcacagccacaccaccgcttgcaaccactgccacatctccttgcaaccaccgc |
6667831 |
T |
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