View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_low_33 (Length: 233)
Name: NF1621_low_33
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 37889202 - 37888985
Alignment:
| Q |
1 |
tcgatgattacacctaatatgttattttttaaaacgataagtgttagtaaattttaacgtggaagtcgaagatcaaatcattgacctccttatcacttca |
100 |
Q |
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| T |
37889202 |
tcgatgattacacctaatatgtcattttttaaaacgataagtgttagtaaattttaacgtggaagatgaagatcaaatcattgacctccttatcatttca |
37889103 |
T |
|
| Q |
101 |
ctctttaactttctctttgagtcgccaaatcatcaaggtaataaactccattggaaaaggggtataagatcaagaaatccagtgtttaatacgaaaacaa |
200 |
Q |
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||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
37889102 |
ctctttaactttctc--tgagttgccaaatcatcggggtaataaactcaattggaaaaggggtataagatcaagaaatccagtctttgatacgaaaacaa |
37889005 |
T |
|
| Q |
201 |
cagacaatagatgcaagaag |
220 |
Q |
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|||||||||||||||||||| |
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| T |
37889004 |
cagacaatagatgcaagaag |
37888985 |
T |
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