View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1621_low_38 (Length: 227)
Name: NF1621_low_38
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_low_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 31560887 - 31561098
Alignment:
| Q |
1 |
ctatagaaggagaaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31560887 |
ctatagaaggagtaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgt |
31560986 |
T |
|
| Q |
101 |
caattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggattttggcagtgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31560987 |
caattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgcttt-ttttttctccgtcattactggattttggcagtgtc |
31561085 |
T |
|
| Q |
201 |
aattactcaatat |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31561086 |
aattactcaatat |
31561098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 194
Target Start/End: Original strand, 31558936 - 31559097
Alignment:
| Q |
27 |
gaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgtcaattgtatctccgtagataattgaa |
126 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||| |
|
|
| T |
31558936 |
gaataatatagaagtaggttgtatcattgttcaagctacatatatatttttaggactcatttttcattttatgtcaaatgtatctctgtagataattgaa |
31559035 |
T |
|
| Q |
127 |
tcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggattttggc |
194 |
Q |
| |
|
| ||| |||| |||||||||||||||||| ||||| |||||| || |||||||||||||||||| |
|
|
| T |
31559036 |
ttggccttctattcttgaattatatttgt-----cttta-tttttccccatcattactggattttggc |
31559097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 31877754 - 31877678
Alignment:
| Q |
83 |
acatttttcaacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtcctt |
159 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |
|
|
| T |
31877754 |
acatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtcctt |
31877678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 31555903 - 31556000
Alignment:
| Q |
22 |
aacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgtcaattgtatctccgtagataa |
121 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
31555903 |
aacaagaataatatagaagtaggttggatcattgttcaagctacatatata-ttttagaacacatt-------ttatgtcaattgtatctttgtagataa |
31555994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 31852320 - 31852354
Alignment:
| Q |
179 |
attactggattttggcagtgtcaattactcaatat |
213 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31852320 |
attactggatttttgcagtgtcaattactcaatat |
31852354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University