View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_low_6 (Length: 498)
Name: NF1621_low_6
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Complemental strand, 13334309 - 13333821
Alignment:
| Q |
17 |
aagtacaatttgtttaataatcataacatattcatatcatccattaagttca----------ggaaacataaacattacaacaatagaaacataaaagaa |
106 |
Q |
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| T |
13334309 |
aagtacaatttgtttaataatcataacatattcatatcatccattaagttcatccttattaaggaaacataaacattataactatagaaacataaaagaa |
13334210 |
T |
|
| Q |
107 |
cttagcaatagtaatatcctttgaacacacactttattttcttcttccatatgtgatgctctctacaaatttgaagtgaaagaccatgaaagaatgtcat |
206 |
Q |
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| T |
13334209 |
cttagcaatagtaatatcctttgaacacacactttattttcttcttccatatgtgatgctctctacaaatttgaagtgaaagaccatgaaagaatgtcat |
13334110 |
T |
|
| Q |
207 |
gtgtttcggcaagttcacctgtggcaccggagaaaccaacaaggacatattcgggcagaatagccgcaaaatcaacagtataagatacagcagtttcctc |
306 |
Q |
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| T |
13334109 |
gtgtttcggcaagttcacctgtggcaccggagaaaccaaccaggacatattcgggcagaatagccgcaaaatcaacagtataagatacagcagtttcctc |
13334010 |
T |
|
| Q |
307 |
tatgacaggaccatttggataatttaccagcgcagtcaattttttcgaggcaggattataacttatgtgtgcctttcctatcgatccttctggtacacga |
406 |
Q |
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| T |
13334009 |
tatgacaggaccatttagataagttaccagcgcagtcaattttttcgaggcaggattataacttatgtgtgcctttcctatcgatccttctggtacacga |
13333910 |
T |
|
| Q |
407 |
tcgattggccatagagcagtagctgaagacctaatcgtgttgatgtcgaattctatatgagttgatttccctgcgatttgagggtccca |
495 |
Q |
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| T |
13333909 |
tcgattggccatagagcagtagctgaagacctaatcgtgttgatgtcgattcctatatgaggtgagttacctgcgatttgaggatccca |
13333821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 467
Target Start/End: Complemental strand, 13308986 - 13308681
Alignment:
| Q |
162 |
atgctctctacaaatttgaagtgaaagaccatgaaagaatgtcatgtgtttcggcaagttcacctgtggcaccggagaaaccaacaaggacatattcggg |
261 |
Q |
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||||||||||||| |||||| || ||||| |||||||| ||||||||||| |||| || ||| |||||||| |||||||||||| || |||| | |
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| T |
13308986 |
atgctctctacaagtttgaaacaaaggaccaagaaagaatatcatgtgtttcagcaacttgaccggtggcacctgagaaaccaacatatacccattccga |
13308887 |
T |
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| Q |
262 |
cagaatagccgcaaaatcaacagtataagatacagcagtttcctctatgacaggaccatttggataatttaccagcgcagtcaattttttcgaggcagga |
361 |
Q |
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| T |
13308886 |
cagaacagaggcaaaatcaataggataagacacaataacatcaactttggcaggactatttggataagttacaaatacactcaagtcttttgaggcagta |
13308787 |
T |
|
| Q |
362 |
ttataacttatgtgtgcctttcctatcgatccttctggtacacgatcgattggccatagagcagtagctgaagacctaatcgtgttgatgtcgaattcta |
461 |
Q |
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| T |
13308786 |
ttataacttatgcgagcctttcctatcgttccttgaggttgacgatcgattggccatggaacactgatcgaagactcaatcgtgttgatgtcaattccta |
13308687 |
T |
|
| Q |
462 |
tatgag |
467 |
Q |
| |
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|||||| |
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|
| T |
13308686 |
tatgag |
13308681 |
T |
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