View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1621_low_7 (Length: 489)
Name: NF1621_low_7
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1621_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 2101494 - 2101806
Alignment:
| Q |
11 |
cagagaggtgaatcgttcatcttcttcatttatgaatgattaggatctgtttggcaaaccgaaaatttggattatgtttcataagcttttaaaaaagttt |
110 |
Q |
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| T |
2101494 |
cagagaggtgaatcgttcatcttcttcatttatgaatgattaggatctgtttggcaaaccgcaaatttggattatgtttcataagcttttaaaaaagttt |
2101593 |
T |
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| Q |
111 |
tgttttgtaattttcacgttttcatgagcttatagtttatatttaccggcttatatga-ttttttataacctttatcatttttcattctcaattttaacc |
209 |
Q |
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| T |
2101594 |
tgttttgtaattttcacgttttcacgagcttatagtttatatttacaggcttatatgatttttttataacctttatcatttttcattctcaattttaacc |
2101693 |
T |
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| Q |
210 |
ttgtagctttagttgaactaacttattagacactacacatgttaggtgtgaacacttttacccgatttgaatcttatgtgtc-taagtttttggtggtgt |
308 |
Q |
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| T |
2101694 |
ttgtagctttagttgaactaatttattagacactacacatgttaggtgtg-acacttttacccgatttgaatcttatgtgtcttaagtttttggtggtgt |
2101792 |
T |
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| Q |
309 |
aaccagtgttatta |
322 |
Q |
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| T |
2101793 |
aaccagtgttatta |
2101806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 317 - 471
Target Start/End: Original strand, 2102059 - 2102236
Alignment:
| Q |
317 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgatatcctctataaggagttgcccgtcatgtttaact-ctaagg-------- |
407 |
Q |
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| T |
2102059 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgatatcctctataaggcgttgcccatcatgtttaactcctaaggtttatatc |
2102158 |
T |
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| Q |
408 |
-------------tttatctatgaagt-aacataaacaaaatcttgcagcgttcttgcatccttgaatttgatggagc |
471 |
Q |
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| T |
2102159 |
atgataactctattttatctatgaagtaaacataaacaaaatcttgcagcgttcttgcatccttgaatttgatggagc |
2102236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 39185054 - 39184928
Alignment:
| Q |
40 |
ttatgaatgattaggatctgtttggcaaaccgaaaatttggattatgtttcataagcttttaaaaaagttttgttttgtaattttcacgttttcatgagc |
139 |
Q |
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|||| |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
39185054 |
ttatcaatggttaggatctgtttggcaaaccgcaaatttggattatgttttataagcttttaaaagagttttgttttgtaattttcacgttttcaagagc |
39184955 |
T |
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| Q |
140 |
ttatagtttatatttaccggcttatat |
166 |
Q |
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| T |
39184954 |
ttatagtttatatttaccggcttatat |
39184928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 39184892 - 39184848
Alignment:
| Q |
182 |
ttatcatttttcattctcaattttaaccttgtagctttagttgaa |
226 |
Q |
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| T |
39184892 |
ttatcatttttcattctcaattttaaccttgtagctttaattgaa |
39184848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 39184433 - 39184394
Alignment:
| Q |
283 |
ttatgtgtctaagtttttggtggtgtaaccagtgttatta |
322 |
Q |
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| T |
39184433 |
ttatgtgtctaagtttttggtggtgtaactagtgttatta |
39184394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 471
Target Start/End: Complemental strand, 39183883 - 39183843
Alignment:
| Q |
431 |
aaaatcttgcagcgttcttgcatccttgaatttgatggagc |
471 |
Q |
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| T |
39183883 |
aaaatcttgcagcgttcttgtatcctagaatttgatggagc |
39183843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 39183970 - 39183919
Alignment:
| Q |
362 |
attgatatcctctataaggagttgcccgtcatgtttaact-ctaaggtttat |
412 |
Q |
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| T |
39183970 |
attgatatcctctataaggtgttgcccgtcgtatttaactcctaaggtttat |
39183919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 4952228 - 4952169
Alignment:
| Q |
408 |
tttatctatgaagtaacataaacaaaatcttgcagcgttcttgcatccttgaatttgatg |
467 |
Q |
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| T |
4952228 |
tttatttatgagataacataaacaaaatcttgcagcgttcttgtatccttgaatttgatg |
4952169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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