View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1621_low_9 (Length: 441)

Name: NF1621_low_9
Description: NF1621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1621_low_9
NF1621_low_9
[»] chr8 (15 HSPs)
chr8 (142-429)||(8709477-8709764)
chr8 (17-91)||(8709816-8709890)
chr8 (36-90)||(15824668-15824722)
chr8 (21-83)||(29920306-29920368)
chr8 (21-94)||(36190832-36190905)
chr8 (21-91)||(34890204-34890274)
chr8 (21-88)||(41086419-41086486)
chr8 (21-91)||(31734175-31734245)
chr8 (38-83)||(33851061-33851106)
chr8 (21-90)||(35456056-35456124)
chr8 (25-89)||(3100018-3100082)
chr8 (24-87)||(4046927-4046991)
chr8 (25-81)||(24510735-24510791)
chr8 (25-89)||(27752651-27752715)
chr8 (27-91)||(43216377-43216441)
[»] chr4 (31 HSPs)
chr4 (21-87)||(35310768-35310834)
chr4 (24-87)||(42915593-42915656)
chr4 (24-87)||(8683332-8683395)
chr4 (21-91)||(20281651-20281721)
chr4 (21-91)||(47867939-47868009)
chr4 (21-90)||(10069757-10069826)
chr4 (24-81)||(48793660-48793717)
chr4 (21-64)||(25297271-25297314)
chr4 (25-88)||(50768504-50768567)
chr4 (21-91)||(2229307-2229377)
chr4 (21-91)||(7654677-7654747)
chr4 (21-91)||(39078217-39078286)
chr4 (21-94)||(16604865-16604938)
chr4 (21-81)||(1585379-1585439)
chr4 (22-90)||(5483301-5483369)
chr4 (25-89)||(30011951-30012015)
chr4 (38-89)||(47807267-47807318)
chr4 (25-91)||(4058779-4058845)
chr4 (21-91)||(41414633-41414703)
chr4 (21-91)||(55580730-55580800)
chr4 (21-90)||(17794564-17794633)
chr4 (21-94)||(50145796-50145868)
chr4 (21-94)||(56318089-56318162)
chr4 (25-89)||(10591500-10591564)
chr4 (21-88)||(14583789-14583856)
chr4 (332-360)||(27582161-27582189)
chr4 (25-89)||(30776481-30776545)
chr4 (58-94)||(31280286-31280322)
chr4 (26-90)||(32323285-32323349)
chr4 (25-89)||(37788510-37788574)
chr4 (25-89)||(39969986-39970050)
[»] chr1 (24 HSPs)
chr1 (21-91)||(52984995-52985065)
chr1 (24-83)||(24728664-24728723)
chr1 (24-87)||(44148869-44148932)
chr1 (21-90)||(3861725-3861794)
chr1 (21-90)||(37735413-37735482)
chr1 (21-88)||(2126100-2126167)
chr1 (21-91)||(6785518-6785588)
chr1 (21-91)||(11241089-11241159)
chr1 (21-91)||(39555615-39555685)
chr1 (25-83)||(43765360-43765418)
chr1 (21-94)||(2246040-2246113)
chr1 (25-89)||(23873861-23873925)
chr1 (25-89)||(38942475-38942539)
chr1 (24-87)||(3076360-3076423)
chr1 (21-80)||(10558796-10558855)
chr1 (24-91)||(12448996-12449063)
chr1 (25-88)||(30221791-30221854)
chr1 (25-88)||(46949383-46949446)
chr1 (21-91)||(6786900-6786970)
chr1 (21-91)||(15959669-15959739)
chr1 (25-89)||(28916549-28916613)
chr1 (25-89)||(25990810-25990874)
chr1 (25-89)||(40220118-40220182)
chr1 (25-89)||(43656071-43656135)
[»] chr3 (20 HSPs)
chr3 (21-94)||(26208080-26208153)
chr3 (21-94)||(36546608-36546681)
chr3 (21-94)||(36561634-36561707)
chr3 (21-91)||(30189637-30189707)
chr3 (21-91)||(37042405-37042475)
chr3 (21-94)||(23311578-23311651)
chr3 (22-91)||(41476324-41476393)
chr3 (21-85)||(6752736-6752800)
chr3 (25-89)||(45781460-45781524)
chr3 (25-89)||(55400801-55400865)
chr3 (21-83)||(2927355-2927417)
chr3 (21-83)||(3972341-3972402)
chr3 (21-83)||(3997476-3997537)
chr3 (25-83)||(43576020-43576078)
chr3 (21-91)||(53270301-53270371)
chr3 (21-94)||(23910498-23910571)
chr3 (25-90)||(26724980-26725045)
chr3 (21-94)||(29235253-29235326)
chr3 (21-90)||(37075026-37075095)
chr3 (38-83)||(46557166-46557211)
[»] chr7 (24 HSPs)
chr7 (24-87)||(47779669-47779732)
chr7 (25-91)||(15995785-15995852)
chr7 (21-91)||(6191107-6191177)
chr7 (21-91)||(12632372-12632442)
chr7 (21-91)||(14574626-14574696)
chr7 (21-91)||(20123708-20123778)
chr7 (25-87)||(22632155-22632217)
chr7 (21-91)||(35923314-35923383)
chr7 (21-91)||(45486017-45486087)
chr7 (21-91)||(46760285-46760355)
chr7 (21-89)||(25737657-25737725)
chr7 (21-91)||(14805932-14806001)
chr7 (21-91)||(15252926-15252995)
chr7 (27-81)||(16917539-16917593)
chr7 (25-91)||(19912797-19912863)
chr7 (25-83)||(19933050-19933108)
chr7 (25-83)||(19964189-19964247)
chr7 (25-89)||(3157497-3157561)
chr7 (25-89)||(18206308-18206372)
chr7 (25-89)||(32491096-32491160)
chr7 (25-89)||(35181253-35181317)
chr7 (25-65)||(36576479-36576519)
chr7 (25-89)||(43107894-43107958)
chr7 (25-89)||(44600507-44600571)
[»] chr6 (6 HSPs)
chr6 (21-87)||(7274908-7274974)
chr6 (21-91)||(3095749-3095818)
chr6 (21-91)||(11082274-11082344)
chr6 (21-91)||(21542480-21542550)
chr6 (21-90)||(30794222-30794291)
chr6 (25-89)||(374161-374225)
[»] chr2 (24 HSPs)
chr2 (21-87)||(8701664-8701730)
chr2 (25-87)||(25572111-25572173)
chr2 (21-90)||(3201388-3201457)
chr2 (24-83)||(29524077-29524136)
chr2 (21-91)||(6110227-6110297)
chr2 (21-94)||(19264162-19264235)
chr2 (24-91)||(9864746-9864814)
chr2 (27-87)||(40808752-40808811)
chr2 (21-91)||(45660427-45660497)
chr2 (25-81)||(40584436-40584492)
chr2 (36-79)||(11825395-11825438)
chr2 (25-91)||(4707487-4707553)
chr2 (21-91)||(7645255-7645325)
chr2 (21-91)||(14874025-14874095)
chr2 (21-91)||(28599176-28599246)
chr2 (21-91)||(35517185-35517255)
chr2 (25-83)||(43451567-43451625)
chr2 (25-89)||(18833940-18834004)
chr2 (21-86)||(28858371-28858436)
chr2 (25-89)||(792386-792450)
chr2 (25-89)||(14565403-14565467)
chr2 (25-89)||(21539819-21539883)
chr2 (25-89)||(29514505-29514569)
chr2 (19-91)||(35022959-35023030)
[»] chr5 (19 HSPs)
chr5 (21-94)||(5984134-5984207)
chr5 (26-87)||(25840931-25840992)
chr5 (24-87)||(19413206-19413269)
chr5 (24-83)||(39505270-39505329)
chr5 (21-91)||(17351450-17351520)
chr5 (21-91)||(20644076-20644146)
chr5 (21-91)||(37522618-37522688)
chr5 (21-91)||(42273709-42273779)
chr5 (21-91)||(43589991-43590061)
chr5 (21-81)||(42104287-42104347)
chr5 (22-65)||(24439633-24439676)
chr5 (21-91)||(11261913-11261983)
chr5 (21-78)||(4463422-4463479)
chr5 (21-90)||(34425392-34425461)
chr5 (25-89)||(13146793-13146857)
chr5 (25-89)||(16286114-16286178)
chr5 (25-89)||(24432431-24432495)
chr5 (25-89)||(25962479-25962543)
chr5 (25-89)||(31316832-31316896)
[»] scaffold0009 (1 HSPs)
scaffold0009 (24-87)||(157859-157922)
[»] scaffold0774 (1 HSPs)
scaffold0774 (21-91)||(3457-3527)
[»] scaffold0111 (1 HSPs)
scaffold0111 (21-91)||(40241-40311)
[»] scaffold0012 (1 HSPs)
scaffold0012 (21-85)||(160312-160376)
[»] scaffold1157 (1 HSPs)
scaffold1157 (25-88)||(1699-1762)
[»] scaffold0442 (1 HSPs)
scaffold0442 (21-86)||(10107-10172)
[»] scaffold0132 (2 HSPs)
scaffold0132 (26-91)||(1079-1144)
scaffold0132 (26-91)||(9039-9104)
[»] scaffold0005 (1 HSPs)
scaffold0005 (21-88)||(233519-233586)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 142 - 429
Target Start/End: Complemental strand, 8709764 - 8709477
Alignment:
Q  142 cttacaatttaagacgaagagagtatcttaaaagcattaattnnnnnnnnnnnnnngaattaatgcacatcaaaaataatattttttgtactttcaaaaa 241  Q
    ||||||||||||||||||||||||||||||||| ||||||||              ||||||||||||||| ||||||||| ||||||||||||||||||    
T  8709764 cttacaatttaagacgaagagagtatcttaaaaacattaattaaaaaataaaaaaagaattaatgcacatcgaaaataataatttttgtactttcaaaaa 8709665  T
Q  242 ggagttcggatttgctcaaactacccatcatccatctattgtcaatttatgatagacatagactagaatgaaaaatatcaataatattcgtttgtgttta 341  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  8709664 ggagttcggatttgctcaatctacccatcatccatctattgtcaatttatgataaagatagactagaatggaaaatatcaataatattcgtttgtgttta 8709565  T
Q  342 tctctctcataaatgaaacaaatctcaactcattcattagcatttttctcattttactttttaaaattgtatttaaataattgagtat 429  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8709564 tctctcttataaatggaacaaatctcaactcattcattagcatttttctcattttactttttaaaattgtatttaaataattgagtat 8709477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 8709890 - 8709816
Alignment:
Q  17 acatatagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||| ||||||||||||||||||| |||| ||||||||||||||   ||||||||||||||||||||||||    
T  8709890 acatatagtcaatgaaaaatgtttttacttcttcccatgagacttatttcaaagaaaacacaaaaaactatactc 8709816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 15824722 - 15824668
Alignment:
Q  36 tgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  15824722 tgtttttacatctttccatgaaacttattctaaagaaaacacaaaaaactatact 15824668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 29920368 - 29920306
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||  |||| |||||||||||    
T  29920368 atagccaatgaaaattgtttttacatcttcccatgaaacttattccaaagataacacaaaaaa 29920306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 36190832 - 36190905
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||||||||||||| |||||||||||||| | || | |||| ||   |||||||||||||||||||||||||||    
T  36190832 atagccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactctaa 36190905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 34890274 - 34890204
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  |||||||||||||||| |||||||    
T  34890274 atagccaatgaaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaattatactc 34890204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 41086486 - 41086419
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactata 88  Q
    |||||||||||||| |||||||||||||||  || | |||| ||   |||||||||||||||||||||    
T  41086486 atagccaatgaaaattgtttttacatctttatataaaacttttttcaaagaaaacacaaaaaactata 41086419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 31734175 - 31734245
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||| ||||| | || | |||| ||   ||||||||||||||||||||||||    
T  31734175 atagccaatgaaaattgtttttatatcttcctataaaacttttttcaaagaaaacacaaaaaactatactc 31734245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 33851106 - 33851061
Alignment:
Q  38 tttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    ||||||||||||||||||| ||||||||  |||| |||||||||||    
T  33851106 tttttacatctttccatgaaacttattccaaagagaacacaaaaaa 33851061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 35456124 - 35456056
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    |||||||||||||| |||||||||||||||| || | |||| |||  || |||||| |||||||||||||    
T  35456124 atagccaatgaaaattgtttttacatctttctataaaactttttc-aaaaaaaacataaaaaactatact 35456056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 3100018 - 3100082
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  3100018 ccaatgagaattatttttacatctttccatgaaacttattccaacgagaacacaaaaaattatac 3100082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 4046991 - 4046927
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacaca-aaaaactat 87  Q
    ||||||||||| | ||||||||| ||||||||| |||||||   ||||||||||| |||||||||    
T  4046991 gccaatgaaaattatttttacatatttccatgaaacttattataaagaaaacacacaaaaactat 4046927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 24510791 - 24510735
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaa 81  Q
    ||||| |||| ||||||||||||||||||||| ||||||||  |  |||||||||||    
T  24510791 ccaataaaaattgtttttacatctttccatgaaacttattccaataaaaacacaaaa 24510735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 27752651 - 27752715
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  27752651 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 27752715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 43216441 - 43216377
Alignment:
Q  27 aatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||| |||||||||||||| | || | |||| ||   ||||||||||||||||||||||||    
T  43216441 aatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactc 43216377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 35310834 - 35310768
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  35310834 atagccaatgaaaattgtttttacatctttccatgaaacttattctaaagaaaacacaaaaaactat 35310768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 42915593 - 42915656
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    ||||||||||| ||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  42915593 gccaatgaaaattgtttttacatctttccatgaaacttattccaaagaaaacacaaaaaactat 42915656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 8683395 - 8683332
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    ||||||||||| | ||||||||| ||||||||| ||||||||  ||||||||||||||||||||    
T  8683395 gccaatgaaaattatttttacatatttccatgaaacttattccaaagaaaacacaaaaaactat 8683332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 20281651 - 20281721
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  ||||||||||||||||||||||||    
T  20281651 atagccaatgaaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaactatactc 20281721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 47867939 - 47868009
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  ||||||||||||||||||||||||    
T  47867939 atagccaatgaaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaactatactc 47868009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 10069757 - 10069826
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    |||||||||||||| |||||||||||||||| || | |||| ||  |||||||| |||||||||||||||    
T  10069757 atagccaatgaaaattgtttttacatctttctataaaacttttttcgaagaaaatacaaaaaactatact 10069826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 48793717 - 48793660
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaa 81  Q
    ||||||||||| |||||||||||||| |||||| ||||||||  ||||||||||||||    
T  48793717 gccaatgaaaattgtttttacatcttcccatgaaacttattccaaagaaaacacaaaa 48793660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 25297314 - 25297271
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttatt 64  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  25297314 atagccaatgaaaattgtttttacatctttccatgaaacttatt 25297271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 50768504 - 50768567
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactata 88  Q
    |||||||||| | ||||||||||||||||||| ||||||||  | |||||||||||||| ||||    
T  50768504 ccaatgaaaattatttttacatctttccatgaaacttattccaaggaaaacacaaaaaattata 50768567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 2229307 - 2229377
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    ||||||||| |||| |||||||||||||| | || | |||| |||  ||||||||||||||||||||||||    
T  2229307 atagccaataaaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaactatactc 2229377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 7654677 - 7654747
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||| ||||| | || | |||| |||  ||||||||||||||||||||||||    
T  7654677 atagccaatgaaaattgtttttatatcttcctataaaactttttccaaagaaaacacaaaaaactatactc 7654747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 39078217 - 39078286
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||| ||| || | |||| |||  ||||||||||||||||||||||||    
T  39078217 atagccaatgaaaattgtttttacatc-ttctataaaactttttccaaagaaaacacaaaaaactatactc 39078286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 16604938 - 16604865
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||||||||||||| |||||| ||||||| | || | |||| ||   |||||||||||||||||||||||||||    
T  16604938 atagccaatgaaaattgttttaacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactctaa 16604865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 1585439 - 1585379
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaa 81  Q
    ||||||||| |||| |||||| |||||||||||||| |||||||   ||||||||||||||    
T  1585439 atagccaataaaaattgttttaacatctttccatgaaacttatttcaaagaaaacacaaaa 1585379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 5483369 - 5483301
Alignment:
Q  22 tagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    ||||||||||||| |||||||||||||| | || | |||||||   |||||||||||||||| ||||||    
T  5483369 tagccaatgaaaattgtttttacatcttcctattaaacttattttaaagaaaacacaaaaaattatact 5483301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 30012015 - 30011951
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || ||||||||||||||||||||| ||||||||  || | ||||||||||| |||||    
T  30012015 ccaatgataattgtttttacatctttccatgaaacttattccaaaaataacacaaaaaattatac 30011951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 47807267 - 47807318
Alignment:
Q  38 tttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||||||||||||||| ||||||||  |||| ||||||||||| |||||    
T  47807267 tttttacatctttccatgaaacttattccaaagagaacacaaaaaattatac 47807318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 4058779 - 4058845
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||| |||||||||||||| | || | |||| ||   ||||||||||||||||||||||||    
T  4058779 ccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactc 4058845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 41414703 - 41414633
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    ||||||||| |||| |||||||||||||| | || | |||| ||   ||||||||||||||||||||||||    
T  41414703 atagccaataaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactc 41414633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 55580730 - 55580800
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | ||   |||| |||  ||||||||| ||||||||||||||    
T  55580730 atagccaatgaaaattgtttttacatcttcctatacaactttttccaaagaaaacaaaaaaaactatactc 55580800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 17794633 - 17794564
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    |||||||||||||| |||||||||||||| | || | | |||||   |||||||| ||||||||||||||    
T  17794633 atagccaatgaaaattgtttttacatcttcctataaaatttatttcaaagaaaacgcaaaaaactatact 17794564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 50145796 - 50145868
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||||||||||||| ||| |||||||||| |||| | ||||||||  ||| ||||||||| || ||||||||||    
T  50145796 atagccaatgaaaattgtgtttacatcttcccataaaacttattccaaag-aaacacaaacaattatactctaa 50145868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 56318162 - 56318089
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    ||||| |||||||| |||||||||||||| | || |  ||| |||  ||||||||||||||||| |||||||||    
T  56318162 atagctaatgaaaattgtttttacatcttcctataaacctttttccaaagaaaacacaaaaaaccatactctaa 56318089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 10591564 - 10591500
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  10591564 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 10591500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 14583789 - 14583856
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaag-aaaacacaaaaaactata 88  Q
    |||||||||||||| |||||||||||||| |||||| |||||||   ||| |||||||||| |||||||    
T  14583789 atagccaatgaaaa-tgtttttacatcttcccatgaaacttattttaaagaaaaacacaaataactata 14583856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 360
Target Start/End: Original strand, 27582161 - 27582189
Alignment:
Q  332 tttgtgtttatctctctcataaatgaaac 360  Q
    |||||||||||||||||||||||||||||    
T  27582161 tttgtgtttatctctctcataaatgaaac 27582189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 30776545 - 30776481
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  30776545 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 30776481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 31280286 - 31280322
Alignment:
Q  58 acttattcggaagaaaacacaaaaaactatactctaa 94  Q
    ||||||||  |||||||||||||||||||||||||||    
T  31280286 acttattccaaagaaaacacaaaaaactatactctaa 31280322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 32323349 - 32323285
Alignment:
Q  26 caatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    ||||||||| |||||||||||||| |||| |  ||||||   ||||||||||||||||| |||||    
T  32323349 caatgaaaattgtttttacatcttcccataaatcttattttaaagaaaacacaaaaaacaatact 32323285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 37788510 - 37788574
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  37788510 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 37788574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 39970050 - 39969986
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  39970050 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 39969986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 52984995 - 52985065
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| || ||| ||||||||  ||||||||||||||||||||||||    
T  52984995 atagccaatgaaaattgtttttacatcttcccgtgaaacttattccaaagaaaacacaaaaaactatactc 52985065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 24728723 - 24728664
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    ||||||||||| |||||||||||||| |||||| ||||||||| ||||||||||||||||    
T  24728723 gccaatgaaaattgtttttacatcttcccatgaaacttattcgaaagaaaacacaaaaaa 24728664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 44148932 - 44148869
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    ||||||||||| |||||||||||||| |||||| ||||||||  ||||||||||||||||||||    
T  44148932 gccaatgaaaattgtttttacatcttcccatgaaacttattccaaagaaaacacaaaaaactat 44148869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 3861794 - 3861725
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    |||||||||||||| |||||||||||||||| || | ||||||||  ||||||||| |||||| ||||||    
T  3861794 atagccaatgaaaattgtttttacatctttcaataaaacttattctaaagaaaacataaaaaattatact 3861725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 37735482 - 37735413
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    ||||||||| |||| ||||||||| |||| |||||| ||||||||  ||||||| |||||||||||||||    
T  37735482 atagccaataaaaattgtttttacttcttcccatgaaacttattccaaagaaaatacaaaaaactatact 37735413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 2126100 - 2126167
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactata 88  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  |||||||||||||||||||||    
T  2126100 atagccaatgaaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaactata 2126167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 6785518 - 6785588
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| ||||||||||||||   || | |||| |||  ||||||||||||||||||||||||    
T  6785518 atagccaatgaaaattgtttttacatcttcatataaaactttttcaaaagaaaacacaaaaaactatactc 6785588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 11241089 - 11241159
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| || ||||||||||| | || | |||| |||  ||||||||||||||||||||||||    
T  11241089 atagccaatgaaaattggttttacatcttcctataaaactttttccaaagaaaacacaaaaaactatactc 11241159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 39555685 - 39555615
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||||| || | |||| ||   ||||||||||||||| ||||||||    
T  39555685 atagccaatgaaaattgtttttacatctttctataaaacttttttcaaagaaaacacaaaaacctatactc 39555615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 43765360 - 43765418
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    ||||||||||||||||||||||||| | || | ||||||||  ||||||||||||||||    
T  43765360 ccaatgaaaaatgtttttacatcttcctataaaacttattctaaagaaaacacaaaaaa 43765418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 2246113 - 2246040
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||||||||||||| | ||||||||| || | || | |||||||   |||||||||||||||||||||||||||    
T  2246113 atagccaatgaaaattctttttacatattcctataaaacttatttcaaagaaaacacaaaaaactatactctaa 2246040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 23873925 - 23873861
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    |||||||||| | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  23873925 ccaatgaaaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 23873861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 38942539 - 38942475
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    |||||||||| | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  38942539 ccaatgaaaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 38942475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 3076360 - 3076423
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    ||||||||||| | |||||||||||| |||| | ||||||||  || |||||||||||||||||    
T  3076360 gccaatgaaaattatttttacatcttcccataaaacttattccaaataaaacacaaaaaactat 3076423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 10558855 - 10558796
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaa 80  Q
    |||||||||||||| |||||||||||||| |||| | | ||||||  |||||||||||||    
T  10558855 atagccaatgaaaattgtttttacatcttcccataaaaattattccaaagaaaacacaaa 10558796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 12449063 - 12448996
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    ||||||||||| |||||||||||||| | || | |||| ||   ||||||||||||||||||||||||    
T  12449063 gccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactc 12448996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 30221791 - 30221854
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactata 88  Q
    ||||| ||||||||||||||||||| |||| | |||||||   |||||||||||||||| ||||    
T  30221791 ccaataaaaaatgtttttacatcttcccataaaacttattttaaagaaaacacaaaaaattata 30221854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 46949383 - 46949446
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactata 88  Q
    |||||||||| | ||||||||||||||||||| ||||||||  | || ||||||||||| ||||    
T  46949383 ccaatgaaaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattata 46949446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 6786900 - 6786970
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| ||| ||||||||||   || | |||| |||  ||||||||||||||||||||||||    
T  6786900 atagccaatgaaaattgtgtttacatcttcatataaaactttttccaaagaaaacacaaaaaactatactc 6786970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 15959739 - 15959669
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| ||   |||||||||||||||| |||||||    
T  15959739 atagccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaattatactc 15959669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 28916613 - 28916549
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaa-aacacaaaaaactatac 89  Q
    |||||||||| | ||||||||||||||||||| ||||||||  ||||| ||||||||||| |||||    
T  28916613 ccaatgaaaattatttttacatctttccatgaaacttattc-caagaagaacacaaaaaattatac 28916549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 25990810 - 25990874
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    |||||||||| | ||||||||| ||||||||| ||||||||  | || ||||||||||| |||||    
T  25990810 ccaatgaaaattatttttacatatttccatgaaacttattccaaggagaacacaaaaaattatac 25990874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 40220118 - 40220182
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  40220118 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 40220182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 43656135 - 43656071
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    |||||||||| | ||||||||||||||||||| |||||||   | || ||||||||||| |||||    
T  43656135 ccaatgaaaattatttttacatctttccatgaaacttatttcaaggagaacacaaaaaattatac 43656071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 26208080 - 26208153
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||   | ||||||||||||||||||||||||    
T  26208080 atagccaatgaaaattgtttttacatcttaccatgaaacttattccagacaaaacacaaaaaactatactctaa 26208153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 36546608 - 36546681
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||||||||||||| || ||||||||||| | |||| |||| |||  ||||||| |||||||||||||||||||    
T  36546608 atagccaatgaaaattggttttacatcttcctatgaaactttttccaaagaaaatacaaaaaactatactctaa 36546681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 36561707 - 36561634
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||||||||||||| || ||||||||||| | |||| |||| |||  ||||||| |||||||||||||||||||    
T  36561707 atagccaatgaaaattggttttacatcttcctatgaaactttttccaaagaaaatacaaaaaactatactctaa 36561634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 30189637 - 30189707
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| ||   ||||||||||||||||||||||||    
T  30189637 atagccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactc 30189707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 37042475 - 37042405
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  | ||||||||||||||||||||||    
T  37042475 atagccaatgaaaattgtttttacatcttcctataaaactttttccaacgaaaacacaaaaaactatactc 37042405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 23311651 - 23311578
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||||||||||||| |||||||||||||| | || | |||| ||   ||||||||||| |||||||||||||||    
T  23311651 atagccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacacaaaactatactctaa 23311578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 41476393 - 41476324
Alignment:
Q  22 tagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    ||||||||||||| | |||||||||||||| || | |||| ||   ||||||||||||||||||||||||    
T  41476393 tagccaatgaaaattatttttacatctttctataaaacttttttcaaagaaaacacaaaaaactatactc 41476324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 6752736 - 6752800
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaact 85  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||   || ||||| |||||||||    
T  6752736 atagccaattaaaattgtttttacatctttccatgaaacttattaaaaaaaaaacccaaaaaact 6752800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 45781460 - 45781524
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  |||| ||||||||||| |||||    
T  45781460 ccaatgagaattatttttacatctttccatgaaacttattctaaagagaacacaaaaaattatac 45781524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 55400801 - 55400865
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  |||| ||||||||||| |||||    
T  55400801 ccaatgagaattatttttacatctttccatgaaacttattccaaagagaacacaaaaaattatac 55400865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 2927355 - 2927417
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    |||||||||||||| | |||||||||||| |||| | ||||||||  ||||||| ||||||||    
T  2927355 atagccaatgaaaattatttttacatcttcccataaaacttattccaaagaaaatacaaaaaa 2927417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 3972341 - 3972402
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    ||||| |||||||| |||||||||||||| |||| | ||||||||  ||||||||||||||||    
T  3972341 atagctaatgaaaattgtttttacatcttcccataaaacttattc-aaagaaaacacaaaaaa 3972402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 3997537 - 3997476
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    ||||| |||||||| |||||||||||||| |||| | ||||||||  ||||||||||||||||    
T  3997537 atagctaatgaaaattgtttttacatcttcccataaaacttattc-aaagaaaacacaaaaaa 3997476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 43576020 - 43576078
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    ||||||| || | ||||||||||||||||||| ||||||||| | || |||||||||||    
T  43576020 ccaatgataattatttttacatctttccatgaaacttattcgaaggagaacacaaaaaa 43576078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 53270301 - 53270371
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||| ||||||||| | ||||| |||||||| |||| |||| ||   ||||||||||||||||||||||||    
T  53270301 ataggcaatgaaaattattttttcatctttctatgaaacttttttcaaagaaaacacaaaaaactatactc 53270371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 23910571 - 23910498
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||||||||||||| | |||||||||||| | || | |||| ||   ||||||||||||||| |||||||||||    
T  23910571 atagccaatgaaaattatttttacatcttcctataaaactttttacaaagaaaacacaaaaagctatactctaa 23910498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 26725045 - 26724980
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    |||||||||| ||||||||||||||  ||  | ||||||||  |||||||||||||||| ||||||    
T  26725045 ccaatgaaaattgtttttacatcttctcagaaaacttattccaaagaaaacacaaaaaattatact 26724980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 29235253 - 29235326
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||||||||||||| | |||||||||||| | || | || | |||  ||||||| |||||||||||||||||||    
T  29235253 atagccaatgaaaattatttttacatcttcctattaaacgttttctaaagaaaatacaaaaaactatactctaa 29235326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 37075026 - 37075095
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    |||||||||||||| ||| |||||||||| | || | |||| |||  |||||||||||||||| ||||||    
T  37075026 atagccaatgaaaattgtgtttacatcttcctataaaactttttccaaagaaaacacaaaaaattatact 37075095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 46557211 - 46557166
Alignment:
Q  38 tttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    |||||||||||| |||||| ||||||||  ||||||||||||||||    
T  46557211 tttttacatcttcccatgaaacttattctaaagaaaacacaaaaaa 46557166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 47779669 - 47779732
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    ||||||||||| |||||||||||||| |||||| ||||||||  ||||||||||||||||||||    
T  47779669 gccaatgaaaattgtttttacatcttcccatgaaacttattctaaagaaaacacaaaaaactat 47779732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 15995785 - 15995852
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacac-aaaaaactatactc 91  Q
    |||||| ||| | ||||||||||||||||||| |||||||  ||||||||||| ||||||||||||||    
T  15995785 ccaatggaaattatttttacatctttccatgaaacttattatgaagaaaacacaaaaaaactatactc 15995852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 6191107 - 6191177
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| ||   ||||||||||||||||||||||||    
T  6191107 atagccaatgaaaattgtttttacatcttcctataaaacttttttaaaagaaaacacaaaaaactatactc 6191177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 12632442 - 12632372
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | |||| |||| ||   ||||||||| ||||||||||||||    
T  12632442 atagccaatgaaaattgtttttacatcttcctatgaaacttttttcaaagaaaacataaaaaactatactc 12632372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 14574626 - 14574696
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||| ||||| ||| | |||||||||||| |||||| |||||||   ||||||||||||||||||||||||    
T  14574626 atagacaatggaaattatttttacatcttcccatgaaacttattatcaagaaaacacaaaaaactatactc 14574696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 20123778 - 20123708
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  ||||| ||||||||||||||||||    
T  20123778 atagccaatgaaaattgtttttacatcttgctataaaactttttccaaagaatacacaaaaaactatactc 20123708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 22632155 - 22632217
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    |||||||||| |||||||||||||| |||||| |||||||   ||||||||||||||| ||||    
T  22632155 ccaatgaaaattgtttttacatcttcccatgaaacttatttcaaagaaaacacaaaaatctat 22632217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 35923314 - 35923383
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||||| || | |||| |||  |||||||||| |||||||||||||    
T  35923314 atagccaatgaaaattgtttttacatctttctataaaactttttccaaagaaaacac-aaaaactatactc 35923383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 45486017 - 45486087
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| | |||||||||||| | || | |||| |||  ||||||||||||||||||||||||    
T  45486017 atagccaatgaaaattatttttacatcttcctataaaactttttccaaagaaaacacaaaaaactatactc 45486087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 46760355 - 46760285
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| ||   ||||||||||||||||||||||||    
T  46760355 atagccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactc 46760285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 25737725 - 25737657
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  ||||||||||| ||||||||||    
T  25737725 atagccaatgaaaattgtttttacatcttcctataaaactttttccaaagaaaacacacaaaactatac 25737657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 14805932 - 14806001
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  ||||||| ||||||||||||||||    
T  14805932 atagccaatgaaaattgtttttacatcttcctataaaactttttc-aaagaaaatacaaaaaactatactc 14806001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 15252926 - 15252995
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  ||||||| ||||||||||||||||    
T  15252926 atagccaatgaaaattgtttttacatcttcctataaaactttttc-aaagaaaatacaaaaaactatactc 15252995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 16917539 - 16917593
Alignment:
Q  27 aatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaa 81  Q
    |||||||| |||||||||||||| |||||| ||||||||  ||||||| ||||||    
T  16917539 aatgaaaattgtttttacatcttcccatgaaacttattccaaagaaaaaacaaaa 16917593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 19912863 - 19912797
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||| ||||||||||| || | || | |||| |||  ||||||||||||||||||||||||    
T  19912863 ccaatgaaaattgtttttacattttactataaaactttttccaaagaaaacacaaaaaactatactc 19912797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 19933108 - 19933050
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    |||||||||| | ||||||||||||||||||| ||||||||  | || |||||||||||    
T  19933108 ccaatgaaaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaa 19933050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 19964247 - 19964189
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    |||||||||| | ||||||||||||||||||| ||||||||  | || |||||||||||    
T  19964247 ccaatgaaaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaa 19964189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 3157497 - 3157561
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| |||||||   |||| ||||||||||| |||||    
T  3157497 ccaatgagaattatttttacatctttccatgaaacttatttcaaagagaacacaaaaaattatac 3157561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 18206372 - 18206308
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  18206372 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 18206308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 32491160 - 32491096
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    |||||||||| | ||||||||||||||||||| |||||||   | || ||||||||||| |||||    
T  32491160 ccaatgaaaattatttttacatctttccatgaaacttattataaggagaacacaaaaaattatac 32491096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 35181253 - 35181317
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  35181253 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 35181317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 36576479 - 36576519
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattc 65  Q
    |||||||||| | ||||||||||||||||||| ||||||||    
T  36576479 ccaatgaaaattatttttacatctttccatgaaacttattc 36576519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 43107958 - 43107894
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  43107958 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 43107894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 44600507 - 44600571
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    |||||||||| | ||||||||||||||| ||| ||||||||  | || ||||||||||| |||||    
T  44600507 ccaatgaaaattatttttacatctttccttgaaacttattctaaggagaacacaaaaaattatac 44600571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 7274974 - 7274908
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||  ||||||| ||||||||||||    
T  7274974 atagccaatgaaaattgtttttacatcttcccatgaaacttattccaaagaaaatacaaaaaactat 7274908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 3095818 - 3095749
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  ||||||||||||||||||||||||    
T  3095818 atagccaatgaaaattgtttttacatcttcctataaaactt-ttccaaagaaaacacaaaaaactatactc 3095749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 11082344 - 11082274
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||  | || | |||| |||  ||||||||||||||||||||||||    
T  11082344 atagccaatgaaaattgtttttacatctccctataaaactttttccaaagaaaacacaaaaaactatactc 11082274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 21542480 - 21542550
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    ||||||||| |||| |||||||||||||| | || | |||| |||  ||||||||||||||||||||||||    
T  21542480 atagccaataaaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaactatactc 21542550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 30794291 - 30794222
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    ||||||||||||||||||||||||||||| | || | ||||||||  || |||||| |||||| ||||||    
T  30794291 atagccaatgaaaaatgtttttacatcttcctataaaacttattccaaataaaacataaaaaattatact 30794222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 374161 - 374225
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    |||||||||| | ||| ||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  374161 ccaatgaaaattatttatacatctttccatgaaacttattctaaggagaacacaaaaaattatac 374225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 8701664 - 8701730
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||  ||||||||| ||||||||||    
T  8701664 atagccaatgaaaattgtttttacatcttcccatgaaacttattccaaagaaaacataaaaaactat 8701730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 25572111 - 25572173
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    |||||||||| |||||||||||||| |||||| ||||||||  ||||||||||||||||||||    
T  25572111 ccaatgaaaattgtttttacatcttcccatgaaacttattccaaagaaaacacaaaaaactat 25572173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 3201388 - 3201457
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    |||||||||||||| |||||||||||||||| || | |||| |||  |||||||||||||||||||||||    
T  3201388 atagccaatgaaaattgtttttacatctttctataaaactttttccaaagaaaacacaaaaaactatact 3201457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 29524136 - 29524077
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    ||||||||||| |||||||||||||| |||||| ||||||||  ||||||||||||||||    
T  29524136 gccaatgaaaattgtttttacatcttcccatgaaacttattccaaagaaaacacaaaaaa 29524077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 6110297 - 6110227
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| ||| |||||||||||||||| ||||||||    
T  6110297 atagccaatgaaaattgtttttacatcttcctataaaactttttccgaagaaaacacaaaaagctatactc 6110227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 19264162 - 19264235
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  |||||||||||||||| ||||||||||    
T  19264162 atagccaatgaaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaattatactctaa 19264235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 9864814 - 9864746
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaa-aaaactatactc 91  Q
    ||||||||||| ||||||||| |||| |||||| ||||||||  |||||||||||| ||||||||||||    
T  9864814 gccaatgaaaattgtttttacctcttcccatgaaacttattccaaagaaaacacaaaaaaactatactc 9864746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 40808811 - 40808752
Alignment:
Q  27 aatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    |||||||| |||||||||||||| |||||| ||||||||  ||||||||||||||||||||    
T  40808811 aatgaaaattgtttttacatctt-ccatgaaacttattccaaagaaaacacaaaaaactat 40808752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 45660427 - 45660497
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| ||   ||||||||||||||||||||||||    
T  45660427 atagccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactc 45660497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 40584492 - 40584436
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaa 81  Q
    |||||||||| |||||||||||||| |||| | ||||||||  ||||||||||||||    
T  40584492 ccaatgaaaattgtttttacatcttcccataaaacttattctaaagaaaacacaaaa 40584436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 11825438 - 11825395
Alignment:
Q  36 tgtttttacatctttccatgagacttattcggaagaaaacacaa 79  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||    
T  11825438 tgtttttacatctttccatgaaacttattccaaagaaaacacaa 11825395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 4707487 - 4707553
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||| |||||| ||||||| || | | ||||||||  | ||||||||||||||||||||||    
T  4707487 ccaatgaaaattgttttaacatcttcccgttaaacttattctaaggaaaacacaaaaaactatactc 4707553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 7645325 - 7645255
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| ||||||||||| || |||||| | ||||||  | |||||||||||| | |||||||    
T  7645325 atagccaatgaaaattgtttttacatgttcccatgaaatttattctaaggaaaacacaaaatattatactc 7645255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 14874025 - 14874095
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| | |||||||||||| | || | |||| ||   ||||||||||||||||||||||||    
T  14874025 atagccaatgaaaattatttttacatcttcctataaaacttttttcaaagaaaacacaaaaaactatactc 14874095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 28599246 - 28599176
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| | |||||||||||| | || |  ||| |||  ||||||||||||||||||||||||    
T  28599246 atagccaatgaaaattatttttacatcttcctataaatctttttccaaagaaaacacaaaaaactatactc 28599176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 35517185 - 35517255
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| | |||||||||||  | || | |||| |||  ||||||||||||||||||||||||    
T  35517185 atagccaatgaaaattatttttacatctcactataaaactttttccaaagaaaacacaaaaaactatactc 35517255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 43451567 - 43451625
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    |||||||||| | ||||||||||||||||||| ||||||||  | || |||||||||||    
T  43451567 ccaatgaaaattatttttacatctttccatgaaacttattctaaggagaacacaaaaaa 43451625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 18834004 - 18833940
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaa-aacacaaaaaactatac 89  Q
    ||||||| || ||||||||||||||||||||| ||||||||  ||||| ||||||||||| |||||    
T  18834004 ccaatgataattgtttttacatctttccatgaaacttattc-caagaataacacaaaaaattatac 18833940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 28858371 - 28858436
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaacta 86  Q
    |||||||||||||| | |||||||||||||| || | |||| ||   |||||||||||||||||||    
T  28858371 atagccaatgaaaattatttttacatctttctataaaacttttttcaaagaaaacacaaaaaacta 28858436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 792450 - 792386
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  792450 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 792386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 14565467 - 14565403
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  14565467 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 14565403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 21539819 - 21539883
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  21539819 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 21539883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 29514569 - 29514505
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    |||||||||| | ||||||||||||| ||||| ||||||||  | || ||||||||||| |||||    
T  29514569 ccaatgaaaattatttttacatcttttcatgaaacttattctaaggataacacaaaaaattatac 29514505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 35022959 - 35023030
Alignment:
Q  19 atatagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    ||||||| |||||||| |||||||||||||| | |||| ||||| ||  || ||||||||||||| |||||||    
T  35022959 atatagcaaatgaaaattgtttttacatcttcctatgaaacttactc-caaaaaaacacaaaaaattatactc 35023030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 5984207 - 5984134
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactctaa 94  Q
    |||| ||||||||| ||||||||||| |||| || | ||||||||  |||||||||||||||||||||||||||    
T  5984207 atagtcaatgaaaattgtttttacatatttctataaaacttattccaaagaaaacacaaaaaactatactctaa 5984134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 25840931 - 25840992
Alignment:
Q  26 caatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    ||||||||| |||||||||||||| |||||| ||||||||  ||||||||||||||||||||    
T  25840931 caatgaaaattgtttttacatcttcccatgaaacttattccaaagaaaacacaaaaaactat 25840992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 19413206 - 19413269
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    ||||||||||| |||||||||||||| |||| | |||||||   ||||||||||||||||||||    
T  19413206 gccaatgaaaattgtttttacatcttcccataaaacttatttcaaagaaaacacaaaaaactat 19413269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 39505329 - 39505270
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaa 83  Q
    ||||||||||| |||||||||||||| |||| | ||||||||  ||||||||||||||||    
T  39505329 gccaatgaaaattgtttttacatcttaccataaaacttattccaaagaaaacacaaaaaa 39505270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 17351450 - 17351520
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    ||||||||| |||| ||||||||||||||||||| | ||||||||  | ||||| | ||||||||||||||    
T  17351450 atagccaattaaaattgtttttacatctttccataaaacttattccaacgaaaataaaaaaaactatactc 17351520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 20644076 - 20644146
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  |||||||||||||||| |||||||    
T  20644076 atagccaatgaaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaattatactc 20644146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 37522688 - 37522618
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| |||  || |||||||||||||||||||||    
T  37522688 atagccaatgaaaattgtttttacatcttcctataaaactttttccaaaaaaaacacaaaaaactatactc 37522618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 42273709 - 42273779
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| ||||||||||||||   || | |||| |||  ||||||||||||||||||||||||    
T  42273709 atagccaatgaaaattgtttttacatcttcttataaaactttttccaaagaaaacacaaaaaactatactc 42273779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 43590061 - 43589991
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||  | || | |||| |||  ||||||||||||||||||||||||    
T  43590061 atagccaatgaaaattgtttttacatctccctataaaactttttcaaaagaaaacacaaaaaactatactc 43589991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 42104347 - 42104287
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaa 81  Q
    |||||||||||||| |||||||||||||| |||||| |||| |||  |||| |||||||||    
T  42104347 atagccaatgaaaattgtttttacatcttcccatgaaacttgttccaaagagaacacaaaa 42104287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 24439633 - 24439676
Alignment:
Q  22 tagccaatgaaaaatgtttttacatctttccatgagacttattc 65  Q
    |||||||||| || ||||||||||||||||||||| ||||||||    
T  24439633 tagccaatgataattgtttttacatctttccatgaaacttattc 24439676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 11261983 - 11261913
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||||||| | || | |||| ||   |||||||||||||||| |||||||    
T  11261983 atagccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaattatactc 11261913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 4463422 - 4463479
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacaca 78  Q
    ||||||| |||||| |||||||||||||| ||||||  |||||||  |||||||||||    
T  4463422 atagccagtgaaaattgtttttacatcttcccatgaagcttattccaaagaaaacaca 4463479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 34425392 - 34425461
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatact 90  Q
    |||||||||||||| ||||||||||| || | || | |||| ||   |||||||||||||||||||||||    
T  34425392 atagccaatgaaaattgtttttacatattcctataaaacttttttcaaagaaaacacaaaaaactatact 34425461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 13146793 - 13146857
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||| | ||||||||  |||| ||||||||||| |||||    
T  13146793 ccaatgagaattatttttacatctttccataaaacttattccaaagagaacacaaaaaattatac 13146857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 16286178 - 16286114
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||| ||||| ||||||||  |||| ||||||||||| |||||    
T  16286178 ccaatgagaattatttttacatcttttcatgaaacttattccaaagagaacacaaaaaattatac 16286114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 24432495 - 24432431
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  24432495 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 24432431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 25962543 - 25962479
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  25962543 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 25962479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 31316896 - 31316832
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatac 89  Q
    ||||||| || | ||||||||||||||||||| ||||||||  | || ||||||||||| |||||    
T  31316896 ccaatgagaattatttttacatctttccatgaaacttattccaaggagaacacaaaaaattatac 31316832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 157859 - 157922
Alignment:
Q  24 gccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactat 87  Q
    ||||||||||| |||||||||||||  |||||| ||||||||  ||||||||||||||||||||    
T  157859 gccaatgaaaattgtttttacatctccccatgaaacttattccaaagaaaacacaaaaaactat 157922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 3527 - 3457
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| | |||||||||||| | || | |||| |||  ||||||||||||||||||||||||    
T  3527 atagccaatgaaaattatttttacatcttcctataaaactttttcaaaagaaaacacaaaaaactatactc 3457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 40241 - 40311
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    |||||||||||||| |||||||||| ||||| || | | ||||||  ||||||||||||||| ||||||||    
T  40241 atagccaatgaaaattgtttttacaactttctataaaatttattccaaagaaaacacaaaaagctatactc 40311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 160312 - 160376
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaact 85  Q
    |||||||||||||| || ||||||||||| ||||||   ||||||  ||||||||||||||||||    
T  160312 atagccaatgaaaactggttttacatcttcccatgaattttattccaaagaaaacacaaaaaact 160376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1157 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 1762 - 1699
Alignment:
Q  25 ccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactata 88  Q
    ||||||||||||||||||||||||| |||||| ||| ||||  | |||||||||| ||| ||||    
T  1762 ccaatgaaaaatgtttttacatcttcccatgaaactaattccaaggaaaacacaataaattata 1699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 10107 - 10172
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaacta 86  Q
    |||| ||||||||| |||||||||||||| | || | |||| |||  |||||||||||||||||||    
T  10107 atagtcaatgaaaattgtttttacatcttcctataaaactttttctaaagaaaacacaaaaaacta 10172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 1079 - 1144
Alignment:
Q  26 caatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    ||||||||| |||||||||||||||| || | |||| ||   || |||||||||||||||||||||    
T  1079 caatgaaaactgtttttacatctttctataaaacttttttaaaaaaaaacacaaaaaactatactc 1144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 9039 - 9104
Alignment:
Q  26 caatgaaaaatgtttttacatctttccatgagacttattcggaagaaaacacaaaaaactatactc 91  Q
    ||||||||| |||||||||||||||| || | |||| ||   || |||||||||||||||||||||    
T  9039 caatgaaaactgtttttacatctttctataaaacttttttaaaaaaaaacacaaaaaactatactc 9104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 233586 - 233519
Alignment:
Q  21 atagccaatgaaaaatgtttttacatctttccatgagacttattcggaag-aaaacacaaaaaactata 88  Q
    |||||||||||||| |||||||||||||| |||||| |||||||   ||| |||||||||| |||||||    
T  233586 atagccaatgaaaa-tgtttttacatcttcccatgaaacttattttaaagaaaaacacaaataactata 233519  T

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