View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1622-INSERTION-1 (Length: 418)
Name: NF1622-INSERTION-1
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1622-INSERTION-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Original strand, 25865158 - 25865568
Alignment:
| Q |
8 |
aattacctctttctcattccacttcttttgttcatagtctgcttatatcacgtccgaatagaagagttgtaatccagttgatgaatacatagaatctgtt |
107 |
Q |
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| T |
25865158 |
aattacctctttctcattccacttcttttgttcatagtctgcttatatcacggccgaatagaagagttgtaatccagttgatgaatacatagaatctgtt |
25865257 |
T |
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| Q |
108 |
cctccagctgacgacccgtgtaatatacgccgagcgccaaatnnnnnnnnnnnnnnctcctgccagcgctaacccttttccctcctgcatgagcatgatc |
207 |
Q |
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| T |
25865258 |
cctccagctgacgacccgtgtaatatacgccgagcgccaaataaaaaaactaaaaactcctgccagcgctaacccttttccctcctgcatgagcatgatc |
25865357 |
T |
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| Q |
208 |
ggtaaggtaataacaagaacactaaatattttaaagcttcaccggaagtagctcatgagtgatgttatattaattaccttgctttgtctaaggtcaacaa |
307 |
Q |
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| T |
25865358 |
ggtaaggtaataacaagaacactaaatattttaaagcttcaccggaagtagctcatgaatgatgttatattaattaccttgctttgtctaaggtcaacaa |
25865457 |
T |
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| Q |
308 |
gagccttgtatctgccaatagttgccatgctgccgagatgcttgtaaacaaatggatcaccgagttctatttcttttgcactgtttgcatgacctgcacc |
407 |
Q |
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| T |
25865458 |
gagccttgtatctgccaatagttgccatgctgccgagatgcttgtaaacaaatggatcaccaagttctatttcttttgcactgtttgcatgacctgcacc |
25865557 |
T |
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| Q |
408 |
ttctttaccga |
418 |
Q |
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| T |
25865558 |
ttctttaccga |
25865568 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 30216755 - 30216835
Alignment:
| Q |
279 |
aattaccttgctttgtctaaggtcaacaagagccttgtatctgccaatagttgccatgctgccgagatgcttgtaaacaaa |
359 |
Q |
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| T |
30216755 |
aattaccttgttctgtctgaggtctactagagccttgtaacttccaacagttgccatgcttccaagatgcttgtacacaaa |
30216835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 30216441 - 30216519
Alignment:
| Q |
38 |
ttcatagtctgcttatatcacgtccgaatagaagagttgtaatccagttgatgaatacatagaatctgttcctccagct |
116 |
Q |
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| T |
30216441 |
ttcatattctgcttatatcacggccaaaaacaaaagttgtagcccagttaatagctacatagaatctgttcctccagct |
30216519 |
T |
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