View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1622-INSERTION-3 (Length: 158)
Name: NF1622-INSERTION-3
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1622-INSERTION-3 |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 28486225 - 28486073
Alignment:
| Q |
8 |
attatgtcattgcttcaacacgtaccaagcagcaaggagcataatatcttt--gtcttctacaatttggcacgtggcaagattccaagagcatgattatt |
105 |
Q |
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| T |
28486225 |
attatgtcattgcttcaactcgtaccaagcagcaaggagcataatatctttatgtcttctacaatttggcacgtggcaagattccaagagcatgattatt |
28486126 |
T |
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| Q |
106 |
aactatctatgcatgtgattcttgaatataagcaaagtgttggactgataata |
158 |
Q |
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| T |
28486125 |
aactatctatgcatgtgattcttgaatataagcaaagtgttggactgataata |
28486073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 3e-68
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 46090548 - 46090395
Alignment:
| Q |
7 |
aattatgtcattgcttcaacacgtaccaagcagcaaggagcataatatcttt--gtcttctacaatttggcacgtggcaagattccaagagcatgattat |
104 |
Q |
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| T |
46090548 |
aattatgtcattgcttcaacacgtagcaagcagcaaggagcataatatctttatgtcttctacaatttggcacgtggcaagactccaagagcatgattat |
46090449 |
T |
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| Q |
105 |
taactatctatgcatgtgattcttgaatataagcaaagtgttggactgataata |
158 |
Q |
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| T |
46090448 |
taactatctatgcatgtgattcttgaatataagcaaagtgttggaatgataata |
46090395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 3e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 3e-68
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 43275923 - 43275770
Alignment:
| Q |
7 |
aattatgtcattgcttcaacacgtaccaagcagcaaggagcataatatctt--tgtcttctacaatttggcacgtggcaagattccaagagcatgattat |
104 |
Q |
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| T |
43275923 |
aattatgtcattgcttcaacacgtagcaagcagcaaggagcataatatcttcatgtcttctacaatttggaacgtggcaagattccaagagcatgattat |
43275824 |
T |
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| Q |
105 |
taactatctatgcatgtgattcttgaatataagcaaagtgttggactgataata |
158 |
Q |
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| T |
43275823 |
taactatctatgcatgtgattcttgaatataagcaaagtgttggaatgataata |
43275770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 32002383 - 32002500
Alignment:
| Q |
41 |
aaggagcataatatcttt---gtcttctacaatttggcacgtgg-caagattccaagagcatgattattaactatctatgcatgtgattcttgaatataa |
136 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||| | | |||||||||||||||| ||||||||||| |||| ||||| |||||||||| |
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| T |
32002383 |
aaggagcataatatcttttatgtcttctccaatttggcacgtagactagattccaagagcatgcttattaactatgtatg----tgatttttgaatataa |
32002478 |
T |
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| Q |
137 |
gcaaagtgttggactgataata |
158 |
Q |
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| |||||| |||| |||||||| |
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| T |
32002479 |
gtaaagtgctggaatgataata |
32002500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 39834573 - 39834420
Alignment:
| Q |
7 |
aattatgtcattgcttcaacacgtaccaagcagcaaggagcataatatcttt--gtcttctacaatttggcacgtggcaagattccaagagcatgattat |
104 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
39834573 |
aattatgtcattgcttcaacacgtagcaagcagcaaggagcataatatctttatgtcttctacaatttggcacgtcgcaagattcaaagagcatgattat |
39834474 |
T |
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| Q |
105 |
taactatctatgcatgtgattcttgaatataagcaaagtgttggactgataata |
158 |
Q |
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| T |
39834473 |
taactatctatgcatgtgattcttaaatataagcaaagtgttggaatgataata |
39834420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 5e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 3194283 - 3194435
Alignment:
| Q |
7 |
aattatgtcattgcttcaacacgtaccaagcagcaaggagcataatatcttt--gtcttctacaatttggcacgtggcaagattccaagagcatgattat |
104 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3194283 |
aattatgtcattgcttcaacacgta-------gcaaggagcataatatctttatgtcttctacaatttggcacgtggcaagattccaagagcatgattat |
3194375 |
T |
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| Q |
105 |
taactatctatgc------atgtgattcttgaatataagcaaagtgttggactgataata |
158 |
Q |
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| T |
3194376 |
taactatctatgcatgtgaatgtgattcttgaatataagcaaattgttggaatgataata |
3194435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 4e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 25227183 - 25227074
Alignment:
| Q |
7 |
aattatgtcattgcttcaacacgtaccaagcagcaaggagcataatatcttt--gtcttctacaatttggcacgtggcaagattccaagagcatgattat |
104 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25227183 |
aattatgtcattgcttcaacacgtagcaagcagca-------taatatctttatgtcttctacaatttggcacgtggcaagattccaagagcatgattat |
25227091 |
T |
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| Q |
105 |
taactatctatgcatgt |
121 |
Q |
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||||||| ||||||||| |
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| T |
25227090 |
taactatttatgcatgt |
25227074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 25227049 - 25226997
Alignment:
| Q |
106 |
aactatctatgcatgtgattcttgaatataagcaaagtgttggactgataata |
158 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25227049 |
aactatttatgcatgtgattcttgaatataagcaaagtgttggaatgataata |
25226997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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