View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1622-INSERTION-4 (Length: 629)
Name: NF1622-INSERTION-4
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1622-INSERTION-4 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 252 - 535
Target Start/End: Complemental strand, 8447157 - 8446873
Alignment:
| Q |
252 |
atgggcccagaaactgtatgacaaaatgcgtgataggaggagtaaggtttcatggaatgtaaaatgattataattgttactcttactttaagatatgaaa |
351 |
Q |
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| T |
8447157 |
atgggcccagaaactgtatgacaaaatgcgtgataggaggagtaaggtttcatggaatgtaatatgattataattgttactcttacttta-gatatgaaa |
8447059 |
T |
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| Q |
352 |
gggaagaataaggtccattcacgcttatgtttnnnnnnngtgtgactacaaatctgcttataatgttttggtcaaaacttgtttggttgatatgtattgc |
451 |
Q |
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| T |
8447058 |
gggaagaataaggtccattcacgcttatgtttaaaaaaagtgtgactacaaatctgcttataatgttttggtcaaaacttgtttggttgatatgtattgc |
8446959 |
T |
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| Q |
452 |
aaaatgtgggtcgttgcaaatttttcaccagatgtttg--agagggagagatgcaaatttctaactcttatgttgctggcatttgg |
535 |
Q |
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| T |
8446958 |
aaaatgtgggtcgttgcaaatttttcaccagatgtttgagagagggagagatgcaaatttctaactcttatgttgttggcatttgg |
8446873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 8447574 - 8447397
Alignment:
| Q |
7 |
aatgatgagagtgagtgagctataaaaccaacatatgacattcattcaagtatacattgaatagttgttaaggtaaatggcgagggccgcactattcgtg |
106 |
Q |
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| T |
8447574 |
aatgatgagagtgagtgagctataaaaccaacatatgacattcattcaagtatacattgaatagttgttaaggtaaatggcgagggctgcactattcgtg |
8447475 |
T |
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| Q |
107 |
atgttgtttagaataaaattggcctggaagctggtttttgttattatcctaacgatgtcacttatagtatggttccca |
184 |
Q |
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| T |
8447474 |
atgttgtttagaataaaattggcctggaagctggtttttgtttttatcctaacgatgtcacttatagtatggttccca |
8447397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 576 - 629
Target Start/End: Complemental strand, 8446873 - 8446820
Alignment:
| Q |
576 |
gaacagcgaacgacaaccaatctgtaatctgttcatgtcattaccgtatccata |
629 |
Q |
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| T |
8446873 |
gaacagcgaacgacaaccaatctgtaatctgttcatgtcattaccgtatccata |
8446820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 8447258 - 8447195
Alignment:
| Q |
184 |
atggtagttttgatatctataatgcctttgataaaaaagacaaattaacgcaaatgttgatatc |
247 |
Q |
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| T |
8447258 |
atggtagttttgatatctataatgcctttgaataaaaagaaaaattaacgcaaatgttgatatc |
8447195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 8437079 - 8437008
Alignment:
| Q |
7 |
aatgatgagagtgagtgagctataaaaccaacatatgacattcattcaagtatacattgaatagttgttaag |
78 |
Q |
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| T |
8437079 |
aatgatgagagtgagtgagctataaaactaacgtatgatgttcattcaggtatacattgaatagctgttaag |
8437008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 19452187 - 19452129
Alignment:
| Q |
414 |
atgttttggtcaaaacttgtttggttgatatgtattgcaaaatgtgggtcgttgcaaatt |
473 |
Q |
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| T |
19452187 |
atgttttggttaatacttgtttggttgatatgtattg-taaatgtggatcgttggaaatt |
19452129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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