View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1622-INSERTION-6 (Length: 527)

Name: NF1622-INSERTION-6
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1622-INSERTION-6
NF1622-INSERTION-6
[»] chr1 (7 HSPs)
chr1 (11-527)||(11027631-11028148)
chr1 (27-154)||(11004396-11004525)
chr1 (412-473)||(11042566-11042627)
chr1 (27-78)||(10984121-10984174)
chr1 (292-382)||(10984344-10984434)
chr1 (34-123)||(11033797-11033886)
chr1 (27-123)||(10915196-10915294)


Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 527
Target Start/End: Complemental strand, 11028148 - 11027631
Alignment:
Q  11 ctccacttcctagttttgttatctttttt--gtctttgtaaaagtaccttattggcatgatgctattgtcgcggcgtagaaaactttcgatgccgttgta 108  Q
    ||||||||||||||||||||||||| |||  ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11028148 ctccacttcctagttttgttatcttatttatgtctttgaagaagtaccttattggcatgatgctattgtcacggcgtagaaaactttcgatgccgttgta 11028049  T
Q  109 cattgataaatgttttggtcgagttttgtaaattaaaaatccaataaatgatgctccaagaacaaatataactgcgtcaagaaaaattaacaatgacgaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  11028048 cattgataaatgttttggtcgagttttgtaaattaaaaatccaataaatgatgcaccaagaacgaatataactgcgtcaagaaaaattaacaatgacgaa 11027949  T
Q  209 caaacctatttttgaaggaaataatgaacaaacctagctataaagaaatggaaatgagagaaaggaannnnnnnnnnnctcaggaaaatgaaattattat 308  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||           ||||||||||||||||||||||    
T  11027948 caaacct-tttttgaaggaaataatgaacaaacctagctattaagaaatggaaatgagagaaaggaaattatttttttctcaggaaaatgaaattattat 11027850  T
Q  309 aaacttgattatttattattttttgtttagaatataacgaagtgaaaattaaaaaatatgatgctatatatttctagtcaatatactccacttcatgaaa 408  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||| |||||     
T  11027849 aaacttgattatttattattttttgtttagaacataacgaagtgaaaattgaaaaatatgatgcgatatatttctaatcaatatattccacttaatgaat 11027750  T
Q  409 gacttgatctactgagagagttttatgggagtttgtgttttactgacacgactctttcattttttccttttccatctgatgagaaggcacaaaacctgag 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11027749 gacttgatctactgagagagttttatgggagtttgtgttttactgacacgactctttcattttttccttttccatctgatgagaaggcacagaacctgag 11027650  T
Q  509 atttgtaggttaacaagat 527  Q
    ||||| |||||||||||||    
T  11027649 atttggaggttaacaagat 11027631  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 11004525 - 11004396
Alignment:
Q  27 tgttatctttttt--gtctttgtaaaagtaccttattggcatgatgctattgtcgcggcgtagaaaactttcgatgccgttgtacattgataaatgtttt 124  Q
    |||||||||||||  |||||||||| |||||||||| |||||||||||||| || | ||||||||||  ||||||||| |  ||||  ||||||||||||    
T  11004525 tgttatcttttttatgtctttgtaagagtaccttataggcatgatgctattatcactgcgtagaaaatcttcgatgccatcatacacagataaatgtttt 11004426  T
Q  125 ggtcgagttttgtaaattaaaaatccaata 154  Q
     ||||   |||||| ||||| ||| |||||    
T  11004425 tgtcgccatttgtagattaataatacaata 11004396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 11042627 - 11042566
Alignment:
Q  412 ttgatctactgagagagttttatgggagtttgtgttttactgacacgactctttcatttttt 473  Q
    |||||||||||| ||||||||||||| |||| ||||||||| ||| |||| |||||||||||    
T  11042627 ttgatctactgacagagttttatgggtgtttctgttttactaacatgactatttcatttttt 11042566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 10984121 - 10984174
Alignment:
Q  27 tgttatctttttt--gtctttgtaaaagtaccttattggcatgatgctattgtc 78  Q
    |||||||||||||  |||||||||| |||||||||| |||||||||||||||||    
T  10984121 tgttatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtc 10984174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 382
Target Start/End: Original strand, 10984344 - 10984434
Alignment:
Q  292 gaaaatgaaattattataaacttgattatttattattttttgtttagaatataacgaagtgaaaattaaaaaatatgatgctatatatttc 382  Q
    ||||||||| |||| |||||||| ||||||||  ||| | | ||| ||| |||  ||||| |||||| |||||||||||||||||||||||    
T  10984344 gaaaatgaagttataataaacttcattatttaaaattgtctatttggaacatacagaagtaaaaattgaaaaatatgatgctatatatttc 10984434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 11033797 - 11033886
Alignment:
Q  34 ttttttgtctttgtaaaagtaccttattggcatgatgctattgtcgcggcgtagaaaactttcgatgccgttgtacattgataaatgttt 123  Q
    |||| ||||||||||| | ||||| || ||||||||||||||||| |  |||||||||  ||||||||| |  |||||||||| ||||||    
T  11033797 ttttatgtctttgtaagaatacctaataggcatgatgctattgtcactacgtagaaaatcttcgatgccatcatacattgatagatgttt 11033886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 10915196 - 10915294
Alignment:
Q  27 tgttatctttttt--gtctttgtaaaagtaccttattggcatgatgctattgtcgcggcgtagaaaactttcgatgccgttgtacattgataaatgttt 123  Q
    |||||||||||||  |||||||||| |||||||||| ||||||||| ||||||| |  ||||||||   ||||| |||||  ||||| || ||||||||    
T  10915196 tgttatcttttttatgtctttgtaagagtaccttataggcatgatgttattgtcacttcgtagaaagtcttcgacgccgtcatacatagagaaatgttt 10915294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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