View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1622-INSERTION-7 (Length: 466)

Name: NF1622-INSERTION-7
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1622-INSERTION-7
NF1622-INSERTION-7
[»] chr3 (1 HSPs)
chr3 (8-466)||(50234395-50234853)


Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 466
Target Start/End: Complemental strand, 50234853 - 50234395
Alignment:
Q  8 gtcaattggtttaccagaaagagaagcaatagctttgttgtcaagggcaagaatggtaacggctttaccactgtttatttgttcagccaacttggtttcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234853 gtcaattggtttaccagaaagagaagcaatagctttgttgtcaagggcaagaatggtaacggctttaccactgtttatttgttcagccaacttggtttcg 50234754  T
Q  108 gttaggtatttgctgaacgtggagagttccggatattgtcccaaagttttggttatgtccaaacaattaatcgccgaagagaaagacaacataagtgcca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50234753 gttaggtatttgctgaacgtggagagttccggatattgtcccaaagttttggttatgtccaaacaattaatggccgaagagaaagacaacataagtgcca 50234654  T
Q  208 agcacaaaacagaggtgtttctcaaacccattgttcttttttcttgctttctcttctttgatcagggacaatcagaaaccaagttggtggtatatgaaat 307  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50234653 agcacagaacagaggtgtttctcaaacccattgttcttttttcttgctttctcttctttgatcagggacaatccgaaaccaagttggtggtatatgaaat 50234554  T
Q  308 tgttgagtttgtaggttttgatgtgtgtaggtatatatatacgtttggtttataaatgtgtggtgtgtgggattagtggtcaattttaattatagtaaag 407  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234553 tgttgagtttgtaggttttgatgtgtgtaggtatatatatgcgtttggtttataaatgtgtggtgtgtgggattagtggtcaattttaattatagtaaag 50234454  T
Q  408 tcaaaattgtaacagaaattgtgatctggtggtttaaagagggaagcattttggatggt 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234453 tcaaaattgtaacagaaattgtgatctggtggtttaaagagggaagcattttggatggt 50234395  T

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