View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16220_low_3 (Length: 288)
Name: NF16220_low_3
Description: NF16220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16220_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 3238779 - 3239036
Alignment:
| Q |
12 |
atcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagac |
111 |
Q |
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| T |
3238779 |
atcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagac |
3238878 |
T |
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| Q |
112 |
gtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtat |
211 |
Q |
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| T |
3238879 |
gtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtat |
3238978 |
T |
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| Q |
212 |
gttttcgatannnnnnncaggcggattgttatgaatccaaaagggagcaagaacaacc |
269 |
Q |
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| T |
3238979 |
gttttcgatatttttttcaggcggattgttatgaatccaaaagggagcaagaacaacc |
3239036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 3242949 - 3243022
Alignment:
| Q |
47 |
tccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcaga |
120 |
Q |
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| T |
3242949 |
tccccatggacgattgagcaattcacatggacgattaagaacttctctaagtgtgattctcagatgtactcaga |
3243022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 3243141 - 3243180
Alignment:
| Q |
229 |
caggcggattgttatgaatccaaaagggagcaagaacaac |
268 |
Q |
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| T |
3243141 |
caggcggattgttatgaatccaaaagggaacgagaacaac |
3243180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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