View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16221_high_3 (Length: 333)
Name: NF16221_high_3
Description: NF16221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16221_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 12 - 333
Target Start/End: Original strand, 37285342 - 37285663
Alignment:
| Q |
12 |
atgaacctatgctgaatttaacaattaatctaaaagtatatatagttgagatgctcacagtgagagggaccaaagcaacagagtaaataggcaacttgat |
111 |
Q |
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| T |
37285342 |
atgaacctatgctgaatttaacaattaatctaaaagtatatatagttgagatgctcacagtgagagggaccaaagcaacagagtaaataggcaacttgat |
37285441 |
T |
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| Q |
112 |
agccctccaaatcaatgtttccattgaaatatcctcttgaatttcctctccaacatatttttcaatgctggaactagaagaagaggataattcagctcct |
211 |
Q |
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| T |
37285442 |
agccctccaaatcaatgtttccattgaaatatcctcttgaatttcctctccaacatttttttcaatgctggaactagaagaagaggataattcagctcct |
37285541 |
T |
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| Q |
212 |
ccagcataacgcacatgtatgtagtgatgatcccttctttgaacttgaaatctcctatgtaaaactttttccatactggtattacattttgatcttttgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37285542 |
ccagcataacgcacatgtatgtagtgatgatcccttctttgaacttgaaatctcctatgtaaaactttttccatactggtattacattttgatcttttgg |
37285641 |
T |
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| Q |
312 |
aaactaaatggtacctgaaaat |
333 |
Q |
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|||||||||||||||||||||| |
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| T |
37285642 |
aaactaaatggtacctgaaaat |
37285663 |
T |
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