View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16221_high_4 (Length: 331)

Name: NF16221_high_4
Description: NF16221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16221_high_4
NF16221_high_4
[»] chr8 (1 HSPs)
chr8 (34-308)||(40284760-40285055)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 34 - 308
Target Start/End: Original strand, 40284760 - 40285055
Alignment:
Q  34 acctcaccctttacctggctttgtattctctttggtgtgatcaaactttctaaaaaccatattaggtacaaggatggagcaatagacgaacattacctat 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  40284760 acctcaccctttacctggctttgtattctctttggtgtgatcaaactttctaaaaaccatgtaaggtacaaggatggagcaatagacgaacattacctat 40284859  T
Q  134 gatcttgacctaaaaacgcagatgacatgcttatct--------------------taaatataaaacattttctgtcaccatgcttgcaacaaatagca 213  Q
    ||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||    
T  40284860 gatcttgacctaaaaacgcagatgacatgcttatcttatcttatcttagagtccaataaatataaaacattttctgtcaccatgcttgcaacaaatagca 40284959  T
Q  214 agttaaccaagttacaatttaaaaaatattcaaactccttcctaaagaatataggcataagcgc-aaaaatggccaaaaataaatttgctgatgat 308  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||    
T  40284960 agttaaccaagttacaatttaaaaaatattcaatctccttcctaaagaatataggcataagcacaaaaaatgtccaaaaataaatttgctgatgat 40285055  T

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