View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16221_high_5 (Length: 307)
Name: NF16221_high_5
Description: NF16221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16221_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 23713984 - 23714283
Alignment:
| Q |
1 |
ttgaagataatcagcgagcttaatccagaggctaaagttttattagagcaggccttgttggacgcgaacagggaaagggagaaaaacatattgaaaggca |
100 |
Q |
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| T |
23713984 |
ttgaagataatcagcgagcttaatccagaggctaaagttttattagagcaggccttgttggacgcgaacagggaaagggagaaaaacatattgaaaggca |
23714083 |
T |
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| Q |
101 |
gtccttactctcttccatctccacactctgatcgaatagatgacaatatctctgaggtaatttgacaccctttgagttcttaccaactatttgagtttac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23714084 |
gtccttactctcttccatctccacactctgatcgaatagatgacaatatatctgaggtaatttgacaccctttgatttcttaccaactatttgagtttac |
23714183 |
T |
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| Q |
201 |
tacttagctttcatgtgcatttgaattgaatcatggcaatataattcctccaaacttgttaaatttacagtaggaagtctaattatttggatattcttcg |
300 |
Q |
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| T |
23714184 |
tgctttgcttttatgtgcagttgaattgaattatggcaatatagttcctacaaacttaataaatttacagcaggaagtctaattatttggatatttttcg |
23714283 |
T |
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