View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16221_high_6 (Length: 305)
Name: NF16221_high_6
Description: NF16221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16221_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 11119528 - 11119817
Alignment:
| Q |
1 |
ctactaacatctccatcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaa |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
11119528 |
ctactaacatctccatcatcgttgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaa |
11119627 |
T |
|
| Q |
101 |
catttatagcatttcctaaattcaccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatc |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11119628 |
catttataccatttcctaaattcaccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgcagttgcatcagtatc |
11119727 |
T |
|
| Q |
201 |
attcctgaatggcttaaggtcttcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatccat |
290 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119728 |
attactgaatggcttgaggtcttcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatccat |
11119817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 12206037 - 12206311
Alignment:
| Q |
1 |
ctactaacatctccatcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaa |
100 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12206037 |
ctactaacatcttcatcatcactgtctgcttcaccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaa |
12206136 |
T |
|
| Q |
101 |
catttatagcatttcctaaattcaccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
12206137 |
catttatagcatttcctaaattcaccttagg------------ttcaacatcacagttcttatcacgagcataatcagacattaaggttgcatcagtatc |
12206224 |
T |
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| Q |
201 |
attcctgaatggcttaaggtcttcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatc |
287 |
Q |
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|||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12206225 |
attcctgattggcttgacgtcttcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatc |
12206311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 32741232 - 32741521
Alignment:
| Q |
1 |
ctactaacatctccatcatcattgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaa |
100 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||| |
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| T |
32741232 |
ctactaacatctccaccatcgatgtctacttcaccaacatcgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcagcaa |
32741331 |
T |
|
| Q |
101 |
catttatagcatttcctaaattcaccttaggttcaacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatc |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||| |
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| T |
32741332 |
caattatagcatttcctaaattcaccttaggttcaacatacaattcaacatcgcacttgttatcacgagcataatcagacattgcagttgcatcagtatc |
32741431 |
T |
|
| Q |
201 |
attcctgaatggcttaaggtcttcatccaatgaaccactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatccat |
290 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| |
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| T |
32741432 |
attcctgaatggcttgaggtcttcatccaatgaaccactctcatgtttccaccatagctttactaactattcatcaaaagtatcatccat |
32741521 |
T |
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