View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16221_low_1 (Length: 389)
Name: NF16221_low_1
Description: NF16221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16221_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 39728248 - 39727895
Alignment:
| Q |
17 |
catgtttttgggaagatactcaatgacatagaggagtaaaagctaaatgtacttgcaagatgaagtgtaaaggcagaaaaactctagctatatggctcat |
116 |
Q |
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| T |
39728248 |
catgtttttgggaagatactcaatgacatagaggagtaaaagctaaatgtacttgcaagatcaagtgtaaaggcagaaaaactctagctatatggctcat |
39728149 |
T |
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| Q |
117 |
aggatctacgaggtgttatggatgaagatcatactccatgacctcgaaataaagtacaaagatcatatgaggctaatctgtctgtgataatacttcttcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39728148 |
aggatctacgaggtgttatggatgaagatcatactccatgacctcgaaataaagtacaaagatcatatgaggctaatctgtctgtgataatacttcttcc |
39728049 |
T |
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| Q |
217 |
attagcaatgcatgtaacccaacacgcatgatagaatcaaatacatatagatacattgacccttcatcaaggagaaattagatagtgacctggtcttttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39728048 |
attagcaatgcatgtaacccaacacgcatgatagaatcaaatacatatagatacattgacccttcatcaaggagaaattagatagtgacctggtcttttg |
39727949 |
T |
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| Q |
317 |
gacttcaattcgcaaatgttttcactaagggaggacttccaacaaagtggtttc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39727948 |
gacttcaattcgcaaatgttttcactaagggaggacttccaacaaagtggtttc |
39727895 |
T |
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