View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16222_high_1 (Length: 602)
Name: NF16222_high_1
Description: NF16222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16222_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 176 - 584
Target Start/End: Complemental strand, 15540996 - 15540579
Alignment:
| Q |
176 |
gattcgttgatgcggcagtggtatgcta--gctcaggttgaagatagttctccggtgaaagtacaatgatattataaagagaaatcctatagaaaactct |
273 |
Q |
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| T |
15540996 |
gattcgttgatgcggcagtgtaatgctatagctcaggttgaagatagttctccggtgaaagtacaatgatattataaagagaaatcctatagaaaactct |
15540897 |
T |
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| Q |
274 |
cttgacagtgnnnnnnnn-------caatgtccattggaatggcgtgtcgttacccttatatagtggtgtttgaccagtaaccataaccgtctccgtgaa |
366 |
Q |
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| T |
15540896 |
cttgacagtgaaagtggtgaaaaaacaatgtccattggaatggcgtgtcgttacccttatatagtggtgtttgaccagtaaccataaccgtctccgtgaa |
15540797 |
T |
|
| Q |
367 |
tccaacatagaatgcactagtttgttggagattgtatcaatggtcttgaacaacggagtagcgcttatgagaggcaatggattatgtgttattgggtcga |
466 |
Q |
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| T |
15540796 |
tccaacatagaatgcactagtttgttggagattgtatcaatggtcttgatcaacggagtagcgcttatgtgaggcaatggattatgtgttattgggtcga |
15540697 |
T |
|
| Q |
467 |
tgtatattggacccgggatataggtcgaagcctagtcggaaacaataataacaaagtcttaataatggtcagttactcgcatttctttatgccatagggc |
566 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15540696 |
tgtatattggacccgagatataggtcgaagcctagtcggaaacaataataacaaagtcttaataatggtcagttactcacatttctttatgccatagggc |
15540597 |
T |
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| Q |
567 |
aggaacgcaccatttttc |
584 |
Q |
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| T |
15540596 |
aggaatgcaccatttttc |
15540579 |
T |
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