View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16222_high_4 (Length: 366)
Name: NF16222_high_4
Description: NF16222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16222_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 33308471 - 33308116
Alignment:
| Q |
1 |
caccattctctactatgtgcctttatctatgtttccttccagaagtgtaagaatgcccaaatttggtttcttagttgctttatatgctttgcataaaagg |
100 |
Q |
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| T |
33308471 |
caccattctctactatgtgcctttatctatgtttccttccagaagtgtaagaatgcccaaatttggtttctgagttgctttatatgctttgcataaaagg |
33308372 |
T |
|
| Q |
101 |
gaagatttgctaagcgaacaggtgctcgctgaggtttcttcaatgtgaagtaatttcgaactaatacaacatgtcactaatgttgccttaaagtgaatcg |
200 |
Q |
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| T |
33308371 |
gaagatttgctaagcgaacaggtgctcgctgaggtttcttcaatgtgaagtaatttccaactaatacaacatgtcactaatgttgccttaaagtgaatcg |
33308272 |
T |
|
| Q |
201 |
atgcttgcttagtgaatcaactcttgcaatccaccttttaacttgctgatttggctcgctttgggctcacctagcgaattggcttttactaatttcctca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33308271 |
atgcttgcttagtgaatcaactcttgcaatccaccttttaactcgctgatttggctcgctttgggctcacctagcgaattggcttttactaatttcctca |
33308172 |
T |
|
| Q |
301 |
aatttccaacttggatcgctattggcctgattcttgggagtaattcttggcctttg |
356 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
33308171 |
aatttctaacttggatcgctattggcctgattctcgggagtaattcttggtctttg |
33308116 |
T |
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