View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16222_low_1 (Length: 637)
Name: NF16222_low_1
Description: NF16222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16222_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 20 - 623
Target Start/End: Original strand, 2699834 - 2700437
Alignment:
| Q |
20 |
gaaagtgtagaatatcaaccaaatctccataccaaaccatacaaccaattccaataacttctgcataagcagtacaagaaccattctgtaaacaattacc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2699834 |
gaaagtgtagaatatcaaccaaatctccataccaaaccatacaaccaattccaataacttctgcataagcagtacaagaaccattctgtaaacaattacc |
2699933 |
T |
|
| Q |
120 |
tttacaatctttcgtatcaaccacacgcgcaaaatcaggtaacttcatactcccacgcaccaaaaaaccatcctcaccaaaactaccattcctctgatca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2699934 |
tttacaatctttcgtatcaaccacacgcgcaaaatcaggtaacttcatactcccacgcaccaaaaaaccatcctcaccaaaactaccattcctctgatca |
2700033 |
T |
|
| Q |
220 |
cccttcaatgctgtcatcctcctacatccacttgacaaattcctcttatccttcagttcaaacccttttaagcaattacaaatagccgaacccgaaaccg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2700034 |
cccttcaatgctgtcatcctcctacatccacttgacaaattcctcttatccttcagttcaaacccttttaagcaattacaaatagccgaacccgaaaccg |
2700133 |
T |
|
| Q |
320 |
acaattcacaagctgcaaaatcaccacaatagttataaacctcacactgattatgaggccctttttgtatctcagtccaacgtttctcattttctttcca |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2700134 |
acaattcacaagctgcaaaatcaccacaatagttataaacctcacacacattatgaggccctttttgtatctcagtccaacgtttctcattttctttcca |
2700233 |
T |
|
| Q |
420 |
tagaaactctctttcaataccatcccaaccaatctgaaacctcactgaactattatcattctccttcaactcgttatcattataaacaaaagacctatct |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2700234 |
tagaaactctctttcaataccatcccaaccaatctgaaacctcactgaactattatcattctccttcaactcgttatcattataaacaaaagacctatct |
2700333 |
T |
|
| Q |
520 |
ccattactatcataattaagtataaaaccatgaagaaaactacctgtcatatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttc |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2700334 |
ccattactatcataattaagtataaaaccatgaagaaaactacctgtcatatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttc |
2700433 |
T |
|
| Q |
620 |
ttct |
623 |
Q |
| |
|
|||| |
|
|
| T |
2700434 |
ttct |
2700437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 33 - 624
Target Start/End: Original strand, 2692148 - 2692736
Alignment:
| Q |
33 |
atcaaccaaatctccataccaaaccatacaaccaattccaataacttctgcataagcagtacaagaaccattctgtaaacaattacctttacaatctttc |
132 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||| || |
|
|
| T |
2692148 |
atcaaccaaatctccataccaaagcatacaaccaattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaatcatta |
2692247 |
T |
|
| Q |
133 |
gtatcaaccacacgcgcaaaatcaggtaacttcatactcccacgcaccaaaaaaccatcctcaccaaaactaccattcctctgatcacccttcaatgctg |
232 |
Q |
| |
|
||| |||||||| | ||||| ||||||||||||||| | |||| |||| ||||||||||| |||||||||||||| ||||||| |||||||||||||| |
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|
| T |
2692248 |
gtaacaaccacatgtgcaaagtcaggtaacttcatatacgtacgctccaagaaaccatcctcgccaaaactaccattactctgattacccttcaatgctg |
2692347 |
T |
|
| Q |
233 |
tcatcctcctacatccacttgacaaattcctcttatccttcagttcaaacccttttaagcaattacaaatagccgaacccgaaaccgacaattcacaagc |
332 |
Q |
| |
|
| |||||| |||| |||| ||||||||||| || |||| ||||||||||||| ||||||| ||||||||||||||||| | || |||||||||||||| |
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|
| T |
2692348 |
tgatcctcgtacaaccacctgacaaattcccctcatcccatagttcaaacccttgtaagcaactacaaatagccgaacccaacactgacaattcacaagc |
2692447 |
T |
|
| Q |
333 |
tgcaaaatcaccacaatagttataaacctcacactgattatgaggccctttttgtatctcagtccaacgtttctcattttctttccatagaaactctctt |
432 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
2692448 |
agcaaaactaccacaatagttatataattcacactcattatggggccctttttgtatctcaatccaacgtttctcattttcgttccatacaagctctctt |
2692547 |
T |
|
| Q |
433 |
tcaataccatcccaaccaatctgaaacctcactgaactattatcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcat |
532 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||| || ||||| |||| |||| |||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
2692548 |
tcataaccatcccaaccaatctgaaacctcactaaac---taccattcaacttccactcattatcattataaacaaaatacctatctccattattatcat |
2692644 |
T |
|
| Q |
533 |
aattaagtataaaaccatgaagaaaactacctgtcatatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttcttctc |
624 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
2692645 |
aattaagtacaaaaccatgaagaaaactgcctgtcatatcaacaccagtaaaaattctaccatcccagtaaccacttctccatatttttctc |
2692736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 22 - 624
Target Start/End: Original strand, 14521211 - 14521813
Alignment:
| Q |
22 |
aagtgtagaatatcaaccaaatctccataccaaaccatacaaccaattccaataacttctgcataagcagtacaagaaccattctgtaaacaattacctt |
121 |
Q |
| |
|
|||||| ||| ||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
14521211 |
aagtgttgaacatcgaccaaatctccatgccaaaccatacaaccaattccagttacttctgcataagcagtacaagaagcattctccaaacaattacctt |
14521310 |
T |
|
| Q |
122 |
tacaatctttcgtatcaaccacacgcgcaaaatcaggtaacttcatactcccacgcaccaaaaaaccatcctcaccaaaactaccattcctctgatcacc |
221 |
Q |
| |
|
|||||| || |||||||||||||| ||||| || ||||||||||||||| |||| | || ||||||||||| |||| | | || | |||||||||| |
|
|
| T |
14521311 |
cacaatccttagtatcaaccacacgtgcaaagtcgggtaacttcatactcgtacgctcaaagaaaccatcctcgtcaaatccatcacttgtctgatcacc |
14521410 |
T |
|
| Q |
222 |
cttcaatgctgtcatcctcctacatccacttgacaaattcctcttatccttcagttcaaacccttttaagcaattacaaatagccgaacccgaaaccgac |
321 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||| |||||||| | ||| |
|
|
| T |
14521411 |
cttcaatgctgtcttcctcgtacatccacttgacaaattctccttatcctttagttcaaacccttgtaagcaactacaaatagcccaacccgaatctgac |
14521510 |
T |
|
| Q |
322 |
aattcacaagctgcaaaatcaccacaatagttataaacctcacactgattatgaggccctttttgtatctcagtccaacgtttctcattttctttccata |
421 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| ||||| || || ||||| ||||||| |||| ||||||| |
|
|
| T |
14521511 |
gtatcacaagatgcaaaatcgccacaatagttataaaattcacactgattatgaggccccttttgattcacactccaatatttctcagtttcattccata |
14521610 |
T |
|
| Q |
422 |
gaaactctctttcaataccatcccaaccaatctgaaacctcactgaactattatcattctccttcaactcgttatcattataaacaaaagacctatctcc |
521 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||| |||| |||| |||||||||||||||||| | |||||||| |
|
|
| T |
14521611 |
taagctctctttcataaccatcccaaccaatctgaaacctaactgaactattaccattcaacttccactcattatcattataaacaaaatatctatctcc |
14521710 |
T |
|
| Q |
522 |
attactatcataattaagtataaaaccatgaagaaaactacctgtcatatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttctt |
621 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| | || ||||||||| ||||||| ||||||||||||||||||||||||||| || || |
|
|
| T |
14521711 |
attactatcataatttagtataaaaccatgaagaaaactacttttcgcatcaacaccggtaaaaaccctaccatcccaataaccacttctccattttttt |
14521810 |
T |
|
| Q |
622 |
ctc |
624 |
Q |
| |
|
||| |
|
|
| T |
14521811 |
ctc |
14521813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 36289330 - 36289235
Alignment:
| Q |
33 |
atcaaccaaatctccataccaaaccatacaaccaattccaataacttctgcataagcagtacaagaaccattctgtaaacaattacctttacaatc |
128 |
Q |
| |
|
|||||| || || |||| |||||||||||| |||||||||||| | | | |||| ||||||||||||| ||||| | |||||| |||| |||||| |
|
|
| T |
36289330 |
atcaactaactccccatgccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaatc |
36289235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 614
Target Start/End: Complemental strand, 36288777 - 36288737
Alignment:
| Q |
574 |
acaccagtaaaaattctaccatcccaataaccacttctcca |
614 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
36288777 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
36288737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 614
Target Start/End: Original strand, 12096797 - 12096837
Alignment:
| Q |
574 |
acaccagtaaaaattctaccatcccaataaccacttctcca |
614 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
12096797 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
12096837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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