View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16222_low_12 (Length: 241)
Name: NF16222_low_12
Description: NF16222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16222_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 44157728 - 44157876
Alignment:
| Q |
44 |
ttgaaacttggcgaataatatcaggccattgtttatcattctgtgaaatagttgatagaatttatcgtaactagatattgcaatgtagaatttatcatca |
143 |
Q |
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| T |
44157728 |
ttgaaactaggtaaataatatcatgccattgtttatcattctgtgaaatatttgataggatttatcataactagatattccaatgaaggattt---atca |
44157824 |
T |
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| Q |
144 |
taacctagggatttgagttgataggccattgtttatatttctgtgaaatagt |
195 |
Q |
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| T |
44157825 |
taacctaggaatttgagttgataggccattgtttaaatttctgtgaaatagt |
44157876 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 25652385 - 25652463
Alignment:
| Q |
114 |
ctagatattgcaatgtagaatttatcatcataacctagggatttgagttgataggccattgtttatatttctgtgaaatagt |
195 |
Q |
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| T |
25652385 |
ctagatattgcaatgtaggatttatcat---aacctggggatttgggttgataggccattgtttatatttttgtgaaatagt |
25652463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 13097415 - 13097499
Alignment:
| Q |
1 |
tattaaaggcaaacaatttctgatatatgtaattaaaagtaaattgaaacttggcgaataatatcaggccattgtttatcattct |
85 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13097415 |
tattaaaggcaaacaatttctgatatatgcaattgaaagtaaattgaaacttggcaaataatatcaggccattgtttatcattct |
13097499 |
T |
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