View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16222_low_14 (Length: 227)

Name: NF16222_low_14
Description: NF16222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16222_low_14
NF16222_low_14
[»] chr5 (10 HSPs)
chr5 (1-91)||(13347230-13347319)
chr5 (1-91)||(39371029-39371118)
chr5 (1-91)||(2237378-2237467)
chr5 (1-75)||(9408054-9408128)
chr5 (1-91)||(14831646-14831735)
chr5 (3-91)||(40887942-40888029)
chr5 (3-91)||(42683703-42683790)
chr5 (1-91)||(31800660-31800748)
chr5 (8-77)||(27553387-27553455)
chr5 (1-91)||(1815620-1815705)
[»] chr4 (11 HSPs)
chr4 (132-227)||(3445570-3445665)
chr4 (1-91)||(3672376-3672465)
chr4 (1-91)||(28093096-28093185)
chr4 (1-91)||(6112732-6112820)
chr4 (1-91)||(7217867-7217956)
chr4 (1-91)||(44275808-44275896)
chr4 (5-91)||(21390956-21391040)
chr4 (1-91)||(49243917-49244005)
chr4 (1-90)||(35545014-35545102)
chr4 (93-129)||(3445690-3445726)
chr4 (24-91)||(46192484-46192550)
[»] chr7 (16 HSPs)
chr7 (1-91)||(26972203-26972292)
chr7 (1-91)||(34108528-34108617)
chr7 (1-91)||(36346565-36346654)
chr7 (1-91)||(29953572-29953661)
chr7 (1-90)||(30887802-30887890)
chr7 (1-91)||(28307495-28307584)
chr7 (1-91)||(45782660-45782749)
chr7 (1-91)||(7699883-7699972)
chr7 (1-91)||(7700081-7700170)
chr7 (1-91)||(7700279-7700368)
chr7 (1-91)||(7700477-7700566)
chr7 (1-91)||(34828167-34828255)
chr7 (16-91)||(5811164-5811237)
chr7 (16-91)||(13108264-13108337)
chr7 (1-91)||(42220964-42221052)
chr7 (1-91)||(31148392-31148480)
[»] chr3 (11 HSPs)
chr3 (1-68)||(22894782-22894849)
chr3 (1-90)||(36749508-36749596)
chr3 (1-91)||(34749898-34749987)
chr3 (1-91)||(36370338-36370427)
chr3 (1-91)||(44000091-44000180)
chr3 (1-91)||(48200787-48200876)
chr3 (2-91)||(21559664-21559752)
chr3 (1-91)||(46111944-46112033)
chr3 (1-91)||(51339784-51339872)
chr3 (1-91)||(29472911-29472999)
chr3 (1-91)||(30735496-30735585)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-91)||(6820-6909)
[»] chr8 (9 HSPs)
chr8 (1-91)||(42162700-42162789)
chr8 (1-77)||(44081882-44081958)
chr8 (1-91)||(31318907-31318996)
chr8 (1-91)||(43186129-43186217)
chr8 (3-91)||(10203768-10203855)
chr8 (1-91)||(12665447-12665536)
chr8 (1-91)||(18184655-18184743)
chr8 (1-77)||(30432441-30432516)
chr8 (1-101)||(36189318-36189415)
[»] chr1 (4 HSPs)
chr1 (3-91)||(2509128-2509215)
chr1 (3-90)||(39249864-39249950)
chr1 (1-91)||(34307138-34307227)
chr1 (1-91)||(46901735-46901824)
[»] chr2 (7 HSPs)
chr2 (3-91)||(16089925-16090011)
chr2 (1-91)||(44958215-44958304)
chr2 (3-91)||(33732673-33732759)
chr2 (1-91)||(37498863-37498952)
chr2 (1-69)||(14573097-14573165)
chr2 (8-89)||(3830900-3830979)
chr2 (24-96)||(36315686-36315757)
[»] chr6 (5 HSPs)
chr6 (1-96)||(15345655-15345748)
chr6 (7-91)||(3118047-3118130)
chr6 (5-91)||(3986906-3986990)
chr6 (16-91)||(14023051-14023124)
chr6 (1-91)||(13697670-13697758)
[»] scaffold0043 (1 HSPs)
scaffold0043 (16-91)||(87163-87236)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 13347230 - 13347319
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  13347230 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtct-acctatctttttc 13347319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 39371029 - 39371118
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  39371029 gatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtct-acctatctttttc 39371118  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 2237378 - 2237467
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  2237378 gatgatatgatgtaaaattactcaaatacccctaatacttgggggtgtacataagaagtgtatgaaaaagggtgtct-acctatctttttc 2237467  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 9408128 - 9408054
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgt 75  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||    
T  9408128 gatgatatgatgtaaaattactcaaatacccctaatatatgggggtgtacataagaagtgtatgaaaaatggtgt 9408054  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 14831646 - 14831735
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||| ||||||||||||||||| |  ||||||||||||||||||||||||||| ||||| | |||||||||||||    
T  14831646 gatgatatgatgtaaaattattcaaatacccctaatacgtaggggtgtacataagaagtgtatgaaaaagggtgt-ttacctatctttttc 14831735  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 40888029 - 40887942
Alignment:
Q  3 tgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||| ||||||| ||||||| |||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||||||||    
T  40888029 tgatatgatgtaaaattactaaaatacctctaatagatgggggtgtacataagaggtgtatgaaaaagggtgtct-acctatctttttc 40887942  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 42683703 - 42683790
Alignment:
Q  3 tgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||| ||||||| |||||||||||||| ||| |||||||||||||| |||||||||||| | ||||| | |||||||||||    
T  42683703 tgatatgatgtaaaattactaaaatacccctaatatatgggggtgtacataagaggtgtatgaaaaaggatgtct-atctatctttttc 42683790  T

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Target: chr5; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31800660 - 31800748
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||| | ||| ||||||||| |||| |||||||||||| |||||||| ||||||||||||    
T  31800660 gatgatatgatgtaaaattactaaaatacccctaacatatg-gggtgtacacaagaggtgtatgaaaaagggtgtctg-cctatctttttc 31800748  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 27553455 - 27553387
Alignment:
Q  8 tgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtct 77  Q
    ||||||| ||||||| |||||| ||||| |||| ||||||||||||||| |||||||||||| |||||||    
T  27553455 tgatgtaaaattactaaaatactcctaacacat-agggtgtacataagaggtgtatgaaaaagggtgtct 27553387  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 1815705 - 1815620
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||| |||| |||||||||||      | ||||||||||||||||| |||||||||||||    
T  1815705 gatgatatgatgtaaaattactaaaatacccctaacacat-agggtgtacat---ttctttatgaaaaaaggtgtct-acctatctttttc 1815620  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 3445665 - 3445570
Alignment:
Q  132 agtaccaattaagaataatttaatttattccccacaatcacaaccgattcctatcatatcagccatacnnnnnnncttctcatttttctcttccaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  3445665 agtaccaattaagaataatttaatttattccccacaatcacaaccgattcctatcatatcagccatactttttttcttctcatttttctcttccaa 3445570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 3672376 - 3672465
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||    
T  3672376 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtatct-acctatctttttc 3672465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28093185 - 28093096
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  28093185 gatgatatgatgtaaaaatactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaaggatgtct-acctatctttttc 28093096  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 6112732 - 6112820
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||  |||||| |||||||||||||    
T  6112732 gatgatatgatgtaaaattactcaaatacccctaatacatg-gagtgtacataagaagtgtatgaaaaagagtgtct-acctatctttttc 6112820  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7217867 - 7217956
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||  ||| |||||||||||||||||||| |||||||||||| ||||| | |||||||||||||    
T  7217867 gatgatatgatgtaaaattactaaaatacctataacacatgagggtgtacataagaggtgtatgaaaaagggtgt-ttacctatctttttc 7217956  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 44275808 - 44275896
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||||||| ||||||| | |||||||||||    
T  44275808 gatgatatgatgtaaaattactaaaatacccctaacacatg-gggtgtacataagaggtgtatgaaaaagggtgtct-atctatctttttc 44275896  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 21391040 - 21390956
Alignment:
Q  5 atatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||| ||||||| |||||||||||| |||||| ||||||||||| | |||||||||||| ||||||| |||||||||||||    
T  21391040 atatgatgtaaaattactaaaatacccctaacacatga-ggtgtacataaaaggtgtatgaaaaagggtgtct-acctatctttttc 21390956  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 49243917 - 49244005
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||||||||| | |||||||||||| |||||||||||| | ||||| || ||||||||||    
T  49243917 gatgatatgatgtaaaattactaaaatacccctaatacatg-gagtgtacataagaggtgtatgaaaaaggatgtct-acatatctttttc 49244005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 35545014 - 35545102
Alignment:
Q  1 gatgatatgatgtataattactcaaa-tacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatcttttt 90  Q
    |||||||||||||| ||||||| ||| ||||||||| ||||| | |||||||||||  |||||||||||| ||||||| ||||||||||||    
T  35545014 gatgatatgatgtaaaattactaaaaatacccctaacacatg-gagtgtacataagtggtgtatgaaaaagggtgtct-acctatcttttt 35545102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 3445726 - 3445690
Alignment:
Q  93 tataaaaataataaaaggaattaagcattctaatcaa 129  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3445726 tataaaattaataaaaggaattaagcattctaatcaa 3445690  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 46192484 - 46192550
Alignment:
Q  24 aaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaa-ggtgtctgacctatctttttc 91  Q
    ||||||||||  |||||| |||||||||||||| |||||| |||||| ||||||| |||||||||||||    
T  46192484 aaatacccctggtacatg-gggtgtacataagaggtgtatcaaaaaagggtgtct-acctatctttttc 46192550  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 26972292 - 26972203
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  26972292 gatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtct-acctatctttttc 26972203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34108528 - 34108617
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| | |||||||||||||    
T  34108528 gatgatatgatgtaaaattactcaaatacccctaatacatgggagtgtacataagaagtgtatgaaaaagggtgt-ttacctatctttttc 34108617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 36346654 - 36346565
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||    
T  36346654 gatgatatgatgtaaaattactaaaatacccctaacacatgagggtgtacataagaggtgtatgaaaaagggtgtct-acctatctttttc 36346565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 29953661 - 29953572
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||||||||| ||||||||||||   || |||||||||||||||||||||| ||||||| |||||||||||||    
T  29953661 gatgatatgatgtaaaattactcaaatatccctaatacatggaagtctacataagaagtgtatgaaaaagggtgtct-acctatctttttc 29953572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 30887802 - 30887890
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatcttttt 90  Q
    |||||||||||||| ||||||| ||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||| || |||||||||    
T  30887802 gatgatatgatgtaaaattacttaaatacctctaatacatg-gggtgtatataagaagtgtatgaaaaagggtgtcttacgtatcttttt 30887890  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28307584 - 28307495
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||| ||| | ||| |||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  28307584 gatgatatgatgtaaaattactaaaatacccttaacatatgggggtgtacataagaggtgtatgaaaaaagatgtct-acctatctttttc 28307495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 45782749 - 45782660
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||| ||||| | |||||||||| |||||||| ||||| ||||||| |||||||||||||    
T  45782749 gatgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataaaaagtgtataaaaaagggtgtct-acctatctttttc 45782660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7699972 - 7699883
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||| ||||| | |||||||||||||    
T  7699972 gatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgt-ttacctatctttttc 7699883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7700170 - 7700081
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||| ||||| | |||||||||||||    
T  7700170 gatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgt-ttacctatctttttc 7700081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7700368 - 7700279
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||| ||||| | |||||||||||||    
T  7700368 gatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgt-ttacctatctttttc 7700279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7700566 - 7700477
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||| ||||| | |||||||||||||    
T  7700566 gatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgt-ttacctatctttttc 7700477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34828167 - 34828255
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||| | ||| |||||| ||||||  |||||||||||| | ||||| |||||||||||||    
T  34828167 gatgatatgatgtaaaattactaaaatacccctaacatatg-gggtgtgcataagtggtgtatgaaaaaggatgtct-acctatctttttc 34828255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 5811237 - 5811164
Alignment:
Q  16 aattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||| |||||||||||| |||||| |||||||||  || |||||| ||||| ||||||| |||||||||||||    
T  5811237 aattactaaaatacccctaacacatga-ggtgtacatgggaggtgtataaaaaagggtgtct-acctatctttttc 5811164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 13108264 - 13108337
Alignment:
Q  16 aattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||| |||||||||||| |||||| ||||||||| | | |||||| ||||| ||||||| |||||||||||||    
T  13108264 aattactaaaatacccctaacacatga-ggtgtacatgaaaggtgtataaaaaagggtgtct-acctatctttttc 13108337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 42221052 - 42220964
Alignment:
Q  1 gatgatatgatgtataattactcaaa-tacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||  ||||||| ||| ||||||||| ||||| | |||||||||||  |||||||| ||||||||||| |||||||||||||    
T  42221052 gatgatatgatgttaaattactaaaaatacccctaacacatg-gagtgtacataagtggtgtatga-aaaaggtgtct-acctatctttttc 42220964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31148392 - 31148480
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||  ||||| | ||| ||||||  |||||| ||||||||||||  |||||| |||||||||||||    
T  31148392 gatgatatgatgtaaaattactaaaataagcctaacatatg-gggtgtgtataagaggtgtatgaaaaagagtgtct-acctatctttttc 31148480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 22894782 - 22894849
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894782 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaa 22894849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 36749508 - 36749596
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatcttttt 90  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||||| ||||||||||||    
T  36749508 gatgatatgatgtaaaattactcaaatacctctaatacatgagggtgtacataaaaagtgtatgaaaaagagtgtct-acctatcttttt 36749596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 34749987 - 34749898
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| | ||||||  |||||||||||    
T  34749987 gatgatatgatgtaaaattactcaaatacccctaatacataggggtgtacataagaagtgtatgaaaaaggatgtctg-gctatctttttc 34749898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 36370427 - 36370338
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||  || ||| |||||||||||||    
T  36370427 gatgatatgatgtaaaattactcaaatacccctaatacatgagggtgtatataaaaagtgtatgaaaaagagtatct-acctatctttttc 36370338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 44000091 - 44000180
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||  |||||| |||||||||||||    
T  44000091 gatgatatgatgtaaaattactcaaatacctctaatacatgagggcgtacataaaaagtgtatgaaaaagagtgtct-acctatctttttc 44000180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 48200787 - 48200876
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |||||||||||||| | ||||| |||||||||||||    
T  48200787 gatgatatgatgtaaaattactcaaatacccataatacatgggggtgtacataaaaagtgtatgaaaaaggatgtct-acctatctttttc 48200876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 21559664 - 21559752
Alignment:
Q  2 atgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||||||| ||||||| | |||||||||||    
T  21559664 atgatatgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtatgaaaaatggtgtct-atctatctttttc 21559752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 46112033 - 46111944
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||||||||| || |||| |||| | |||||||||||| ||||||| |||||||||||||    
T  46112033 gatgatatgatgtaaaattactaaaatacccctaatacatggggatgtatataaaaggtgtatgaaaaatggtgtct-acctatctttttc 46111944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 51339872 - 51339784
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| ||||||| |||| ||||||  |||||||||||| |||||||||||| ||||||| |||||||||||||    
T  51339872 gatgatatgatgtaaaattactaaaatacctctaacacatga-tgtgtacataagaggtgtatgaaaaagggtgtct-acctatctttttc 51339784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 29472911 - 29472999
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||| ||||| |||||| ||||||  |||||||||||| | ||||| |||||||||||||    
T  29472911 gatgatatgatgtaaaattactaaaatacccctaacacatg-gggtgtgcataagtggtgtatgaaaaaggatgtct-acctatctttttc 29472999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 30735585 - 30735496
Alignment:
Q  1 gatgatatgatgtataattactcaaa-tacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||  ||||||| ||| ||||||||| ||||| | |||||||||||  |||||||||||| ||||||| |||||||||||||    
T  30735585 gatgatatgatgttaaattactaaaaatacccctaacacatg-gagtgtacataagtggtgtatgaaaaagggtgtct-acctatctttttc 30735496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 6820 - 6909
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  6820 gatgatatgatgtaaaattacttaaatatccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtatct-acctatctttttc 6909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 42162700 - 42162789
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||  |||||| |||||||||||||    
T  42162700 gatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataaaaagtgtatgaaaaagagtgtct-acctatctttttc 42162789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44081882 - 44081958
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtct 77  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  44081882 gatgatataatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtct 44081958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31318907 - 31318996
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| | ||||| |||||||||||||    
T  31318907 gatgatatgatgtaaaattactcaaatactcctaatacatgggggtgtatataagaagtgtatgaaaaatgatgtct-acctatctttttc 31318996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 43186129 - 43186217
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  43186129 gatgatatgatataaaattactcaaatgcccctaatacat-agggtgtacataagaagtgtatgaaaaatgatgtct-acctatctttttc 43186217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 10203768 - 10203855
Alignment:
Q  3 tgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||||| || ||||||| ||||| |||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||||||    
T  10203768 tgatatgatataaaattactaaaatatccctaatacatgagggtgtacataagagatgtatgaaaaagggtgtct-acctatctttttc 10203855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 12665447 - 12665536
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||| ||||| |||||| | ||||| |||||||||||||    
T  12665447 gatgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtacgaaaaaggatgtct-acctatctttttc 12665536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 18184655 - 18184743
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||||||| || ||||||| |||||||||||| |||||| ||||||||||| | |||||||||||| | ||||| |||||||||||||    
T  18184655 gatgatatgatataaaattactaaaatacccctaacacatga-ggtgtacataaaaggtgtatgaaaaaggatgtct-acctatctttttc 18184743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30432441 - 30432516
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtct 77  Q
    |||||||||||||| ||||||| |||||||| ||||| ||| || ||||||||||| |||||||||||| |||||||    
T  30432441 gatgatatgatgtaaaattactaaaatacccataatatatg-ggatgtacataagaggtgtatgaaaaagggtgtct 30432516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 36189318 - 36189415
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttcgtataaaaa 100  Q
    ||||||||||| || ||||| | |||||||||||| | |||  ||||||||||||  |||||||||||| ||||||| ||||||||||||| || |||||    
T  36189318 gatgatatgatataaaattattaaaatacccctaacatatg--ggtgtacataagtggtgtatgaaaaagggtgtct-acctatctttttcctaaaaaaa 36189414  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 2509128 - 2509215
Alignment:
Q  3 tgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||    
T  2509128 tgatatgatgtaaaattactaaaatatccctaatacatgagggtgtacataagaggtgtatgaaaaaaagtgtct-acctatctttttc 2509215  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 39249950 - 39249864
Alignment:
Q  3 tgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatcttttt 90  Q
    |||||| ||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  39249950 tgatataatgtaaaattactaaaatacccctaatacatgggggtgtacataagaggtgtatgaaaaaaggtgtct-acctatcttttt 39249864  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 34307227 - 34307138
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||| ||||| | |||||||||||| |||||||||||||||||||| |||||||||||||    
T  34307227 gatgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataagaggtgtatgaaaaaaggtgtct-acctatctttttc 34307138  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 46901824 - 46901735
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| |||||||||||||| ||| |||||||  |||||||||||||| ||||||||||| | ||||| |||||||||||||    
T  46901824 gatgatatgatgtaaaattactcaaatactcctgatacatggcggtgtacataagaaatgtatgaaaaaggatgtct-acctatctttttc 46901735  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 16089925 - 16090011
Alignment:
Q  3 tgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  16089925 tgatatgatgtaaaattactaaaatacccctaacacatg-gggtgtacataagaggtgtatgaaaaaaggtgtct-acctatctttttc 16090011  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 44958215 - 44958304
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||| |||||||||||| | ||||| |||||||||||||    
T  44958215 gatgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtatgaaaaaggatgtct-acctatctttttc 44958304  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 33732673 - 33732759
Alignment:
Q  3 tgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||| ||||||| |||||||||||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||||||||    
T  33732673 tgatatgatgtaaaattactaaaatacccctaatatatg-gggtgtacataagaggtgtatgaaaaagggtgtct-acctatctttttc 33732759  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 37498952 - 37498863
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||||||| ||||||| |||||||||||| ||||| || ||||||||||| |||||| ||||| ||||||| |||||||||||||    
T  37498952 gatgatatgatgtaaaattactaaaatacccctaacacatggggatgtacataagaggtgtataaaaaagggtgtct-acctatctttttc 37498863  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14573097 - 14573165
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaa 69  Q
    |||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| ||||||| ||||    
T  14573097 gatgatatgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtatgtaaaa 14573165  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 3830979 - 3830900
Alignment:
Q  8 tgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttt 89  Q
    ||||||| ||||||| | |||||||||| ||||| |||||||||||||| |||||||||||| ||||||| |||||||||||    
T  3830979 tgatgtaaaattactaatatacccctaacacatg-gggtgtacataagaggtgtatgaaaaagggtgtct-acctatctttt 3830900  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 36315686 - 36315757
Alignment:
Q  24 aaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaagg-tgtctgacctatctttttcgtata 96  Q
    |||||||||| | |||||||| ||||||||||| |||||| |||||||| ||||| ||||||||||||| ||||    
T  36315686 aaatacccctgacacatgagg-tgtacataagaggtgtatcaaaaaaggatgtct-acctatctttttcctata 36315757  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 15345748 - 15345655
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttcgtata 96  Q
    ||||||||||| |  |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||    
T  15345748 gatgatatgatatcaaattactcaaatgcccctaatacat-agggtgtacataagaagtgtatgaaaaaagatgtct-acctatttttttcctata 15345655  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 3118130 - 3118047
Alignment:
Q  7 atgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||| ||||||| |||||||||||||||||| | ||||||||||||  ||||||||||| | ||||| |||||||||||||    
T  3118130 atgatgtaaaattactaaaatacccctaatacatgggagtgtacataagagatgtatgaaaaaggatgtct-acctatctttttc 3118047  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 3986990 - 3986906
Alignment:
Q  5 atatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    |||||||||| |||||||||||||||| ||||||||| |||| ||||||| || ||||||||||| | ||||| |||||||||||||    
T  3986990 atatgatgtaaaattactcaaatacccttaatacatg-gggtatacataataaatgtatgaaaaatgatgtct-acctatctttttc 3986906  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 14023051 - 14023124
Alignment:
Q  16 aattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||| |||||||||||| |||||| |||||||||  || |||||| ||||| ||||||| |||||||||||||    
T  14023051 aattactaaaatacccctaacacatga-ggtgtacatgggaggtgtataaaaaagggtgtct-acctatctttttc 14023124  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 13697670 - 13697758
Alignment:
Q  1 gatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||||||| || ||||||| ||||| | |||| ||||| ||||||||||||| | ||||||||||| | | ||| |||||||||||||    
T  13697670 gatgatatgatataaaattactaaaatatctctaacacatg-gggtgtacataagtaatgtatgaaaaatgatctct-acctatctttttc 13697758  T

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Target: scaffold0043 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 87236 - 87163
Alignment:
Q  16 aattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 91  Q
    ||||||| |||||||||||| ||||| |||||||||||| | |||||||||||||||||||| |||||||||||||    
T  87236 aattactaaaatacccctaacacatg-gggtgtacataaaaggtgtatgaaaaaaggtgtct-acctatctttttc 87163  T

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